KEGG   PATHWAY: pcoq05211
Entry
pcoq05211                   Pathway                                
Name
Renal cell carcinoma - Propithecus coquereli (Coquerel's sifaka)
Description
Renal cell cancer (RCC) accounts for ~3% of human malignancies and its incidence appears to be rising. Although most cases of RCC seem to occur sporadically, an inherited predisposition to renal cancer accounts for 1-4% of cases. RCC is not a single disease, it has several morphological subtypes. Conventional RCC (clear cell RCC) accounts for ~80% of cases, followed by papillary RCC (10-15%), chromophobe RCC (5%), and collecting duct RCC (<1%). Genes potentially involved in sporadic neoplasms of each particular type are VHL, MET, BHD, and FH respectively. In the absence of VHL, hypoxia-inducible factor alpha (HIF-alpha) accumulates, leading to production of several growth factors, including vascular endothelial growth factor and platelet-derived growth factor. Activated MET mediates a number of biological effects including motility, invasion of extracellular matrix, cellular transformation, prevention of apoptosis and metastasis formation. Loss of functional FH leads to accumulation of fumarate in the cell, triggering inhibition of HPH and preventing targeted pVHL-mediated degradation of HIF-alpha. BHD mutations cause the Birt-Hogg-Dube syndrome and its associated chromophobe, hybrid oncocytic, and conventional (clear cell) RCC.
Class
Human Diseases; Cancer: specific types
Pathway map
pcoq05211  Renal cell carcinoma
pcoq05211

Disease
H00021  Renal cell carcinoma
Organism
Propithecus coquereli (Coquerel's sifaka) [GN:pcoq]
Gene
105805188  PDGFB; platelet-derived growth factor subunit B [KO:K17386]
105805282  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
105805288  EP300; histone acetyltransferase p300 [KO:K04498] [EC:2.3.1.48]
105805988  RAC1; ras-related C3 botulinum toxin substrate 1 isoform X1 [KO:K04392]
105806183  PAK7; serine/threonine-protein kinase PAK 7 isoform X1 [KO:K05736] [EC:2.7.11.1]
105806240  PIK3CA; LOW QUALITY PROTEIN: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
105806347  JUN; transcription factor AP-1 [KO:K04448]
105806600  PAK2; serine/threonine-protein kinase PAK 2 [KO:K04410] [EC:2.7.11.1]
105806663  RAPGEF1; rap guanine nucleotide exchange factor 1 isoform X1 [KO:K06277]
105807498  VEGFA; vascular endothelial growth factor A [KO:K05448]
105807545  KRAS; GTPase KRas [KO:K07827]
105808407  RAP1B; ras-related protein Rap-1b [KO:K07836]
105808528  CUL2; cullin-2 [KO:K03870]
105808974  GAB1; GRB2-associated-binding protein 1 [KO:K09593]
105809043  [KO:K04353]
105810199  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
105810397  AKT3; RAC-gamma serine/threonine-protein kinase isoform X1 [KO:K04456] [EC:2.7.11.1]
105810405  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
105810591  NRAS; GTPase NRas [KO:K07828]
105810783  MAP2K1; dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
105811016  HGF; hepatocyte growth factor [KO:K05460]
105811099  PAK3; serine/threonine-protein kinase PAK 3 isoform X1 [KO:K05733] [EC:2.7.11.1]
105811507  PAK1; serine/threonine-protein kinase PAK 1 isoform X1 [KO:K04409] [EC:2.7.11.1]
105811965  MAP2K2; dual specificity mitogen-activated protein kinase kinase 2 [KO:K04369] [EC:2.7.12.2]
105812073  TGFA; protransforming growth factor alpha [KO:K08774]
105812249  CDKN1A; cyclin-dependent kinase inhibitor 1 [KO:K06625]
105812310  SLC2A1; solute carrier family 2, facilitated glucose transporter member 1 [KO:K07299]
105812349  [KO:K03873]
105812545  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
105812606  AKT1; RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
105813078  TCEB2; transcription elongation factor B polypeptide 2 [KO:K03873]
105813122  CREBBP; CREB-binding protein isoform X1 [KO:K04498] [EC:2.3.1.48]
105813248  EGLN3; egl nine homolog 3 [KO:K09592] [EC:1.14.11.29]
105814042  PIK3R3; phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649]
105814454  PAK6; serine/threonine-protein kinase PAK 6 isoform X1 [KO:K05735] [EC:2.7.11.1]
105814677  BRAF; serine/threonine-protein kinase B-raf [KO:K04365] [EC:2.7.11.1]
105815695  CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393]
105816125  FLCN; folliculin isoform X1 [KO:K09594]
105816291  ETS1; protein C-ets-1 isoform X1 [KO:K02678]
105816561  HRAS; GTPase HRas isoform X1 [KO:K02833]
105816779  TFE3; transcription factor E3 [KO:K09105]
105816815  ARAF; serine/threonine-protein kinase A-Raf [KO:K08845] [EC:2.7.11.1]
105817148  MET; hepatocyte growth factor receptor isoform X1 [KO:K05099] [EC:2.7.10.1]
105817361  CRK; adapter molecule crk isoform X1 [KO:K04438]
105817984  EPAS1; endothelial PAS domain-containing protein 1 [KO:K09095]
105818006  SOS1; son of sevenless homolog 1 [KO:K03099]
105818191  PIK3R2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649]
105819002  RAF1; RAF proto-oncogene serine/threonine-protein kinase isoform X1 [KO:K04366] [EC:2.7.11.1]
105819837  HIF1A; hypoxia-inducible factor 1-alpha isoform X1 [KO:K08268]
105819930  TGFB3; transforming growth factor beta-3 isoform X1 [KO:K13377]
105820545  EGLN2; egl nine homolog 2 [KO:K09592] [EC:1.14.11.29]
105820566  TGFB1; transforming growth factor beta-1 isoform X1 [KO:K13375]
105820591  AKT2; RAC-beta serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
105820606  PAK4; serine/threonine-protein kinase PAK 4 [KO:K05734] [EC:2.7.11.1]
105821763  ARNT; aryl hydrocarbon receptor nuclear translocator [KO:K09097]
105821883  PRCC; proline-rich protein PRCC [KO:K13105]
105822091  RAP1A; ras-related protein Rap-1A [KO:K04353]
105822386  CRKL; crk-like protein [KO:K04438]
105823018  ARNT2; aryl hydrocarbon receptor nuclear translocator 2 [KO:K15589]
105823104  MAPK3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
105823205  EGLN1; egl nine homolog 1 [KO:K09592] [EC:1.14.11.29]
105824793  GRB2; growth factor receptor-bound protein 2 [KO:K04364]
105824997  PIK3CD; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922] [EC:2.7.1.153]
105825417  TCEB1; transcription elongation factor B polypeptide 1 [KO:K03872]
105825663  PTPN11; tyrosine-protein phosphatase non-receptor type 11 isoform X1 [KO:K07293] [EC:3.1.3.48]
105825853  SOS2; son of sevenless homolog 2 [KO:K03099]
105826540  PIK3CB; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform [KO:K00922] [EC:2.7.1.153]
105826612  PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649]
105826908  TGFB2; transforming growth factor beta-2 isoform X1 [KO:K13376]
105827296  BAD; bcl2-associated agonist of cell death [KO:K02158]
Compound
C00007  Oxygen
C00122  Fumarate
C00149  (S)-Malate
Reference
  Authors
Cohen HT, McGovern FJ.
  Title
Renal-cell carcinoma.
  Journal
N Engl J Med 353:2477-90 (2005)
DOI:10.1056/NEJMra043172
Reference
  Authors
Pavlovich CP, Schmidt LS.
  Title
Searching for the hereditary causes of renal-cell carcinoma.
  Journal
Nat Rev Cancer 4:381-93 (2004)
DOI:10.1038/nrc1364
Reference
  Authors
Linehan WM, Walther MM, Zbar B.
  Title
The genetic basis of cancer of the kidney.
  Journal
J Urol 170:2163-72 (2003)
DOI:10.1097/01.ju.0000096060.92397.ed
Reference
  Authors
Kim WY, Kaelin WG.
  Title
Role of VHL gene mutation in human cancer.
  Journal
J Clin Oncol 22:4991-5004 (2004)
DOI:10.1200/JCO.2004.05.061
Reference
  Authors
Sudarshan S, Linehan WM, Neckers L.
  Title
HIF and fumarate hydratase in renal cancer.
  Journal
Br J Cancer 96:403-7 (2007)
DOI:10.1038/sj.bjc.6603547
Reference
  Authors
Sudarshan S, Pinto PA, Neckers L, Linehan WM.
  Title
Mechanisms of disease: hereditary leiomyomatosis and renal cell cancer--a distinct form of hereditary kidney cancer.
  Journal
Nat Clin Pract Urol 4:104-10 (2007)
DOI:10.1038/ncpuro0711
Reference
  Authors
Birchmeier C, Birchmeier W, Gherardi E, Vande Woude GF.
  Title
Met, metastasis, motility and more.
  Journal
Nat Rev Mol Cell Biol 4:915-25 (2003)
DOI:10.1038/nrm1261
Reference
  Authors
Muller-Hocker J, Babaryka G, Schmid I, Jung A
  Title
Overexpression of cyclin D1, D3, and p21 in an infantile renal carcinoma with Xp11.2 TFE3-gene fusion.
  Journal
Pathol Res Pract 204:589-97 (2008)
DOI:10.1016/j.prp.2008.01.010
Reference
  Authors
Bodmer D, van den Hurk W, van Groningen JJ, Eleveld MJ, Martens GJ, Weterman MA, van Kessel AG.
  Title
Understanding familial and non-familial renal cell cancer.
  Journal
Hum Mol Genet 11:2489-98 (2002)
DOI:10.1093/hmg/11.20.2489
Reference
  Authors
Kauffman EC, Ricketts CJ, Rais-Bahrami S, Yang Y, Merino MJ, Bottaro DP, Srinivasan R, Linehan WM
  Title
Molecular genetics and cellular features of TFE3 and TFEB fusion kidney cancers.
  Journal
Nat Rev Urol 11:465-75 (2014)
DOI:10.1038/nrurol.2014.162
Reference
  Authors
Skalsky YM, Ajuh PM, Parker C, Lamond AI, Goodwin G, Cooper CS
  Title
PRCC, the commonest TFE3 fusion partner in papillary renal carcinoma is associated with pre-mRNA splicing factors.
  Journal
Oncogene 20:178-87 (2001)
DOI:10.1038/sj.onc.1204056
Reference
  Authors
Medendorp K, van Groningen JJ, Vreede L, Hetterschijt L, Brugmans L, van den Hurk WH, van Kessel AG
  Title
The renal cell carcinoma-associated oncogenic fusion protein PRCCTFE3 provokes p21 WAF1/CIP1-mediated cell cycle delay.
  Journal
Exp Cell Res 315:2399-409 (2009)
DOI:10.1016/j.yexcr.2009.04.022
Related
pathway
pcoq00020  Citrate cycle (TCA cycle)
pcoq04010  MAPK signaling pathway
pcoq04066  HIF-1 signaling pathway
pcoq04120  Ubiquitin mediated proteolysis
pcoq04350  TGF-beta signaling pathway
pcoq04370  VEGF signaling pathway
KO pathway
ko05211   

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