KEGG   PATHWAY: pleu05340
Entry
pleu05340                   Pathway                                
Name
Primary immunodeficiency - Peromyscus leucopus (white-footed mouse)
Description
Primary immunodeficiencies (PIs) are a heterogeneous group of disorders, which affect cellular and humoral immunity or non-specific host defense mechanisms mediated by complement proteins, and cells such as phagocytes and natural killer (NK) cells. These disorders of the immune system cause increased susceptibility to infection, autoimmune disease, and malignancy. Most of PIs are due to genetic defects that affect cell maturation or function at different levels during hematopoiesis. Disruption of the cellular immunity is observed in patients with defects in T cells or both T and B cells. These cellular immunodeficiencies comprise 20% of all PIs. Disorders of humoral immunity affect B-cell differentiation and antibody production. They account for 70% of all PIs.
Class
Human Diseases; Immune disease
Pathway map
pleu05340  Primary immunodeficiency
pleu05340

Disease
H01725  Primary immunodeficiency disease
Organism
Peromyscus leucopus (white-footed mouse) [GN:pleu]
Gene
114682493  Icos; inducible T-cell costimulator [KO:K06713]
114682873  Rfxank; DNA-binding protein RFXANK isoform X3 [KO:K08062]
114683208  Rfx5; DNA-binding protein RFX5 isoform X2 [KO:K08061]
114683286  Tnfrsf13b; tumor necrosis factor receptor superfamily member 13B [KO:K05150]
114683510  Aicda; single-stranded DNA cytosine deaminase [KO:K10989] [EC:3.5.4.38]
114685581  Cd8a; T-cell surface glycoprotein CD8 alpha chain [KO:K06458]
114685583  Cd8b; T-cell surface glycoprotein CD8 beta chain [KO:K06459]
114685810  Aire; autoimmune regulator [KO:K10603]
114686350  Tap1; antigen peptide transporter 1 [KO:K05653] [EC:7.4.2.14]
114686351  Tap2; antigen peptide transporter 2 [KO:K05654] [EC:7.4.2.14]
114686676  Cd19; B-lymphocyte antigen CD19 isoform X2 [KO:K06465]
114686821  Cd79a; B-cell antigen receptor complex-associated protein alpha chain [KO:K06506]
114686977  Ung; LOW QUALITY PROTEIN: uracil-DNA glycosylase [KO:K03648] [EC:3.2.2.27]
114687957  Jak3; LOW QUALITY PROTEIN: tyrosine-protein kinase JAK3 [KO:K11218] [EC:2.7.10.2]
114690779  [KO:K07360] [EC:2.7.10.2]
114691294  Cd3d; T-cell surface glycoprotein CD3 delta chain [KO:K06450]
114691295  Cd3e; T-cell surface glycoprotein CD3 epsilon chain [KO:K06451]
114692599  Ada; adenosine deaminase isoform X1 [KO:K01488] [EC:3.5.4.4]
114692638  Cd40; tumor necrosis factor receptor superfamily member 5 isoform X1 [KO:K03160]
114694367  Tnfrsf13c; tumor necrosis factor receptor superfamily member 13C isoform X1 [KO:K05151]
114695541  Ciita; MHC class II transactivator isoform X1 [KO:K08060] [EC:2.7.11.1]
114695874  [KO:K08063]
114697015  Btk; tyrosine-protein kinase BTK [KO:K07370] [EC:2.7.10.2]
114700321  [KO:K06465]
114704549  Orai1; calcium release-activated calcium channel protein 1 isoform X1 [KO:K16056]
114705667  Lck; tyrosine-protein kinase Lck [KO:K05856] [EC:2.7.10.2]
114706175  Ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
114706234  [KO:K03648] [EC:3.2.2.27]
114706878  Blnk; B-cell linker protein [KO:K07371]
114707192  Ptprc; receptor-type tyrosine-protein phosphatase C isoform X1 [KO:K06478] [EC:3.1.3.48]
114707230  Cd40lg; CD40 ligand [KO:K03161]
114708654  Il2rg; cytokine receptor common subunit gamma [KO:K05070]
114708820  Cd4; T-cell surface glycoprotein CD4 isoform X2 [KO:K06454]
114710524  [KO:K06554]
114710747  Rag2; V(D)J recombination-activating protein 2 [KO:K10988]
114710763  Rag1; V(D)J recombination-activating protein 1 [KO:K10628] [EC:2.3.2.27]
114710803  Il7r; interleukin-7 receptor subunit alpha [KO:K05072]
114710823  Dclre1c; protein artemis [KO:K10887] [EC:3.1.-.-]
Reference
  Authors
Cunningham-Rundles C, Ponda PP.
  Title
Molecular defects in T- and B-cell primary immunodeficiency diseases.
  Journal
Nat Rev Immunol 5:880-92 (2005)
DOI:10.1038/nri1713
Reference
  Authors
Ballow M.
  Title
Primary immunodeficiency disorders: antibody deficiency.
  Journal
J Allergy Clin Immunol 109:581-91 (2002)
DOI:10.1067/mai.2002.122466
Reference
  Authors
Marodi L, Notarangelo LD.
  Title
Immunological and genetic bases of new primary immunodeficiencies.
  Journal
Nat Rev Immunol 7:851-61 (2007)
DOI:10.1038/nri2195
Reference
  Authors
Geha RS, Notarangelo LD, Casanova JL, Chapel H, Conley ME, Fischer A, Hammarstrom L, Nonoyama S, Ochs HD, Puck JM, Roifman C, Seger R, Wedgwood J.
  Title
Primary immunodeficiency diseases: an update from the International Union of Immunological Societies Primary Immunodeficiency Diseases Classification Committee.
  Journal
J Allergy Clin Immunol 120:776-94 (2007)
DOI:10.1016/j.jaci.2007.08.053
Reference
  Authors
Fischer A.
  Title
Human primary immunodeficiency diseases.
  Journal
Immunity 27:835-45 (2007)
DOI:10.1016/j.immuni.2007.11.012
Reference
  Authors
Fischer A.
  Title
Human primary immunodeficiency diseases: a perspective.
  Journal
Nat Immunol 5:23-30 (2004)
DOI:10.1038/ni1023
Reference
  Authors
Buckley RH.
  Title
Primary immunodeficiency diseases due to defects in lymphocytes.
  Journal
N Engl J Med 343:1313-24 (2000)
DOI:10.1056/NEJM200011023431806
Reference
  Authors
Fischer A, Le Deist F, Hacein-Bey-Abina S, Andre-Schmutz I, Basile Gde S, de Villartay JP, Cavazzana-Calvo M.
  Title
Severe combined immunodeficiency. A model disease for molecular immunology and therapy.
  Journal
Immunol Rev 203:98-109 (2005)
DOI:10.1111/j.0105-2896.2005.00223.x
Reference
  Authors
de Villartay JP, Fischer A, Durandy A.
  Title
The mechanisms of immune diversification and their disorders.
  Journal
Nat Rev Immunol 3:962-72 (2003)
DOI:10.1038/nri1247
Related
pathway
pleu04640  Hematopoietic cell lineage
pleu04660  T cell receptor signaling pathway
pleu04662  B cell receptor signaling pathway
KO pathway
ko05340   

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