KEGG   PATHWAY: pmur04120
Entry
pmur04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Protobothrops mucrosquamatus (Taiwan habu)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pmur04120  Ubiquitin mediated proteolysis
pmur04120

Other DBs
GO: 0016567
Organism
Protobothrops mucrosquamatus (Taiwan habu) [GN:pmur]
Gene
107282246  FZR1; fizzy-related protein homolog [KO:K03364]
107282388  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
107282474  [KO:K04696]
107282528  [KO:K03873]
107282621  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
107282827  UBC; polyubiquitin-C [KO:K08770]
107282884  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
107283092  [KO:K10583] [EC:2.3.2.23]
107283150  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
107283451  CDC20; cell division cycle protein 20 homolog [KO:K03363]
107283525  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
107283756  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
107283917  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
107283981  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
107284010  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
107284020  CUL2; cullin-2 isoform X1 [KO:K03870]
107284082  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
107284258  [KO:K10595] [EC:2.3.2.26]
107284408  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
107284425  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
107284471  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
107284726  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
107284804  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
107284842  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
107284909  CUL5; cullin-5 [KO:K10612]
107284961  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
107285171  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
107285262  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
107285391  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
107285413  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
107285451  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
107285574  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
107285683  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
107285715  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
107285876  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
107285925  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
107286198  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
107286350  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
107286355  [KO:K16060]
107286744  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
107286824  [KO:K20217] [EC:2.3.2.23]
107287010  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
107287084  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
107287133  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
107287298  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
107287381  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
107287473  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
107287524  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
107287756  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
107287768  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
107287820  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
107287914  CDC16; cell division cycle protein 16 homolog [KO:K03353]
107288081  HERC4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
107288089  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
107288388  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
107288529  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
107288668  [KO:K10260]
107288689  [KO:K03178] [EC:6.2.1.45]
107288774  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
107288848  [KO:K03347]
107289191  [KO:K03178] [EC:6.2.1.45]
107289351  HUWE1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
107289717  COP1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
107289836  DDB2; DNA damage-binding protein 2 [KO:K10140]
107289985  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
107290002  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
107290050  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
107290055  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
107290384  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
107290810  [KO:K04506] [EC:2.3.2.27]
107290993  [KO:K10614] [EC:2.3.2.26]
107291536  [KO:K04552] [EC:2.3.2.23]
107291896  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
107292004  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
107292307  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
107292359  UBE4B; ubiquitin conjugation factor E4 B isoform X3 [KO:K10597] [EC:2.3.2.27]
107292639  DDB1; LOW QUALITY PROTEIN: DNA damage-binding protein 1 [KO:K10610]
107292643  [KO:K10599] [EC:2.3.2.27]
107292671  [KO:K10599] [EC:2.3.2.27]
107293338  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
107293413  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
107293423  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
107293616  CUL3; cullin-3 [KO:K03869]
107293681  DET1; DET1 homolog [KO:K10571]
107293692  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
107294047  [KO:K03350]
107294138  [KO:K03873]
107294375  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
107294702  CDC23; cell division cycle protein 23 homolog [KO:K03355]
107294918  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
107294953  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
107295040  [KO:K16061]
107295102  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
107295129  [KO:K10579] [EC:2.3.2.34]
107295165  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
107295180  [KO:K10608] [EC:2.3.2.27]
107295562  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
107295603  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
107295768  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
107295824  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
107295864  [KO:K07868]
107295907  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
107295924  FBXO4; F-box only protein 4 [KO:K10291]
107296109  [KO:K02207] [EC:2.3.2.23]
107296171  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
107296224  [KO:K04696]
107296355  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
107296398  [KO:K16064] [EC:2.3.2.-]
107296953  [KO:K10583] [EC:2.3.2.23]
107297065  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
107297275  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
107297276  ELOC; elongin-C [KO:K03872]
107297331  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
107297404  [KO:K25228]
107297409  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
107297773  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
107297968  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
107298035  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
107298606  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
107299024  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
107299142  UBOX5; RING finger protein 37 [KO:K10600]
107299235  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
107299336  [KO:K08770]
107299410  [KO:K10099]
107299511  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
107299526  UBE2H; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
107299532  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
107299756  [KO:K25228]
107300190  [KO:K10579] [EC:2.3.2.34]
107300488  [KO:K10054] [EC:2.3.2.-]
107300489  [KO:K10054] [EC:2.3.2.-]
107300802  [KO:K02207] [EC:2.3.2.23]
107300858  [KO:K10054] [EC:2.3.2.-]
107300869  [KO:K10054] [EC:2.3.2.-]
107300952  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
107301020  [KO:K07868]
107301028  [KO:K10054] [EC:2.3.2.-]
107301084  [KO:K10601] [EC:2.3.2.27]
107301086  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
107302238  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
107302309  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
107302520  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
107302610  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
107302647  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
107302745  CUL4B; cullin-4B [KO:K10609]
107302805  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
107302814  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
107302929  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
107302998  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
107303057  [KO:K03350]
107303287  KLHL13; kelch-like protein 13 [KO:K10447]
107303304  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pmur03050  Proteasome
KO pathway
ko04120   

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