KEGG   PATHWAY: umr05211
Entry
umr05211                    Pathway                                
Name
Renal cell carcinoma - Ursus maritimus (polar bear)
Description
Renal cell cancer (RCC) accounts for ~3% of human malignancies and its incidence appears to be rising. Although most cases of RCC seem to occur sporadically, an inherited predisposition to renal cancer accounts for 1-4% of cases. RCC is not a single disease, it has several morphological subtypes. Conventional RCC (clear cell RCC) accounts for ~80% of cases, followed by papillary RCC (10-15%), chromophobe RCC (5%), and collecting duct RCC (<1%). Genes potentially involved in sporadic neoplasms of each particular type are VHL, MET, BHD, and FH respectively. In the absence of VHL, hypoxia-inducible factor alpha (HIF-alpha) accumulates, leading to production of several growth factors, including vascular endothelial growth factor and platelet-derived growth factor. Activated MET mediates a number of biological effects including motility, invasion of extracellular matrix, cellular transformation, prevention of apoptosis and metastasis formation. Loss of functional FH leads to accumulation of fumarate in the cell, triggering inhibition of HPH and preventing targeted pVHL-mediated degradation of HIF-alpha. BHD mutations cause the Birt-Hogg-Dube syndrome and its associated chromophobe, hybrid oncocytic, and conventional (clear cell) RCC.
Class
Human Diseases; Cancer: specific types
Pathway map
umr05211  Renal cell carcinoma
umr05211

Disease
H00021  Renal cell carcinoma
Organism
Ursus maritimus (polar bear) [GN:umr]
Gene
103656516  CUL2; cullin-2 [KO:K03870]
103656863  RAP1B; ras-related protein Rap-1b [KO:K07836]
103657827  MAPK3; mitogen-activated protein kinase 3 isoform X1 [KO:K04371] [EC:2.7.11.24]
103658080  GAB1; GRB2-associated-binding protein 1 isoform X1 [KO:K09593]
103658194  TGFB2; transforming growth factor beta-2 proprotein isoform X1 [KO:K13376]
103658481  FLCN; folliculin [KO:K09594]
103658669  HGF; hepatocyte growth factor isoform X2 [KO:K05460]
103659828  [KO:K07836]
103660293  ARNT2; aryl hydrocarbon receptor nuclear translocator 2 [KO:K15589]
103660663  ETS1; protein C-ets-1 isoform X1 [KO:K02678]
103661038  AKT2; RAC-beta serine/threonine-protein kinase isoform X1 [KO:K04456] [EC:2.7.11.1]
103661051  EGLN2; prolyl hydroxylase EGLN2 isoform X1 [KO:K09592] [EC:1.14.11.29]
103661079  PAK4; serine/threonine-protein kinase PAK 4 [KO:K05734] [EC:2.7.11.1]
103661289  PTPN11; tyrosine-protein phosphatase non-receptor type 11 isoform X1 [KO:K07293] [EC:3.1.3.48]
103661476  [KO:K03872]
103661877  EGLN1; egl nine homolog 1 isoform X1 [KO:K09592] [EC:1.14.11.29]
103663617  PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X3 [KO:K02649]
103664148  VEGFA; LOW QUALITY PROTEIN: vascular endothelial growth factor A [KO:K05448]
103664348  ARAF; serine/threonine-protein kinase A-Raf [KO:K08845] [EC:2.7.11.1]
103665244  KRAS; GTPase KRas isoform X1 [KO:K07827]
103665409  SOS2; son of sevenless homolog 2 isoform X1 [KO:K03099]
103665536  CDKN1A; cyclin-dependent kinase inhibitor 1 isoform X1 [KO:K06625]
103665736  GRB2; growth factor receptor-bound protein 2 [KO:K04364]
103666578  CDC42; cell division control protein 42 homolog [KO:K04393]
103666582  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
103666688  AKT3; RAC-gamma serine/threonine-protein kinase isoform X1 [KO:K04456] [EC:2.7.11.1]
103666874  PIK3CD; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922] [EC:2.7.1.153]
103667537  ARNT; aryl hydrocarbon receptor nuclear translocator isoform X1 [KO:K09097]
103668211  TFE3; transcription factor E3 isoform X1 [KO:K09105]
103668677  PRCC; proline-rich protein PRCC [KO:K13105]
103668800  ELOB; elongin-B [KO:K03873]
103668810  [KO:K04498] [EC:2.3.1.48]
103669103  BRAF; serine/threonine-protein kinase B-raf isoform X1 [KO:K04365] [EC:2.7.11.1]
103669173  [KO:K02833]
103669230  CRKL; crk-like protein [KO:K04438]
103669286  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
103669422  NRAS; GTPase NRas [KO:K07828]
103669540  RAF1; RAF proto-oncogene serine/threonine-protein kinase isoform X1 [KO:K04366] [EC:2.7.11.1]
103669642  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
103670095  RAC1; ras-related C3 botulinum toxin substrate 1 [KO:K04392]
103670406  RAPGEF1; rap guanine nucleotide exchange factor 1 [KO:K06277]
103670766  PIK3R3; phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649]
103670822  SLC2A1; solute carrier family 2, facilitated glucose transporter member 1 isoform X1 [KO:K07299]
103670861  JUN; transcription factor AP-1 [KO:K04448]
103670922  TGFB3; transforming growth factor beta-3 proprotein [KO:K13377]
103671035  HRAS; GTPase HRas isoform X3 [KO:K02833]
103671227  EPAS1; endothelial PAS domain-containing protein 1 [KO:K09095]
103671814  TGFA; protransforming growth factor alpha isoform X1 [KO:K08774]
103671891  SOS1; son of sevenless homolog 1 isoform X1 [KO:K03099]
103672464  HIF1A; hypoxia-inducible factor 1-alpha isoform X1 [KO:K08268]
103673553  PAK6; serine/threonine-protein kinase PAK 6 [KO:K05735] [EC:2.7.11.1]
103674159  EP300; histone acetyltransferase p300 [KO:K04498] [EC:2.3.1.48]
103674160  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
103674429  PAK5; serine/threonine-protein kinase PAK 5 [KO:K05736] [EC:2.7.11.1]
103675043  RAP1A; ras-related protein Rap-1A isoform X1 [KO:K04353]
103675162  PIK3R2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649]
103676125  PIK3CA; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
103676520  PDGFB; platelet-derived growth factor subunit B isoform X1 [KO:K17386]
103676585  MET; hepatocyte growth factor receptor [KO:K05099] [EC:2.7.10.1]
103676878  AKT1; RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
103677394  TGFB1; transforming growth factor beta-1 proprotein isoform X1 [KO:K13375]
103678069  PAK1; serine/threonine-protein kinase PAK 1 [KO:K04409] [EC:2.7.11.1]
103678592  PIK3CB; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1 [KO:K00922] [EC:2.7.1.153]
103678928  PAK2; serine/threonine-protein kinase PAK 2 [KO:K04410] [EC:2.7.11.1]
103679064  MAP2K1; dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
103679423  BAD; bcl2-associated agonist of cell death [KO:K02158]
103679739  PAK3; serine/threonine-protein kinase PAK 3 [KO:K05733] [EC:2.7.11.1]
103680905  EGLN3; prolyl hydroxylase EGLN3 isoform X1 [KO:K09592] [EC:1.14.11.29]
103681263  ELOC; elongin-C [KO:K03872]
103681834  MAP2K2; dual specificity mitogen-activated protein kinase kinase 2 [KO:K04369] [EC:2.7.12.2]
103682087  [KO:K07293] [EC:3.1.3.48]
Compound
C00007  Oxygen
C00122  Fumarate
C00149  (S)-Malate
Reference
  Authors
Cohen HT, McGovern FJ.
  Title
Renal-cell carcinoma.
  Journal
N Engl J Med 353:2477-90 (2005)
DOI:10.1056/NEJMra043172
Reference
  Authors
Pavlovich CP, Schmidt LS.
  Title
Searching for the hereditary causes of renal-cell carcinoma.
  Journal
Nat Rev Cancer 4:381-93 (2004)
DOI:10.1038/nrc1364
Reference
  Authors
Linehan WM, Walther MM, Zbar B.
  Title
The genetic basis of cancer of the kidney.
  Journal
J Urol 170:2163-72 (2003)
DOI:10.1097/01.ju.0000096060.92397.ed
Reference
  Authors
Kim WY, Kaelin WG.
  Title
Role of VHL gene mutation in human cancer.
  Journal
J Clin Oncol 22:4991-5004 (2004)
DOI:10.1200/JCO.2004.05.061
Reference
  Authors
Sudarshan S, Linehan WM, Neckers L.
  Title
HIF and fumarate hydratase in renal cancer.
  Journal
Br J Cancer 96:403-7 (2007)
DOI:10.1038/sj.bjc.6603547
Reference
  Authors
Sudarshan S, Pinto PA, Neckers L, Linehan WM.
  Title
Mechanisms of disease: hereditary leiomyomatosis and renal cell cancer--a distinct form of hereditary kidney cancer.
  Journal
Nat Clin Pract Urol 4:104-10 (2007)
DOI:10.1038/ncpuro0711
Reference
  Authors
Birchmeier C, Birchmeier W, Gherardi E, Vande Woude GF.
  Title
Met, metastasis, motility and more.
  Journal
Nat Rev Mol Cell Biol 4:915-25 (2003)
DOI:10.1038/nrm1261
Reference
  Authors
Muller-Hocker J, Babaryka G, Schmid I, Jung A
  Title
Overexpression of cyclin D1, D3, and p21 in an infantile renal carcinoma with Xp11.2 TFE3-gene fusion.
  Journal
Pathol Res Pract 204:589-97 (2008)
DOI:10.1016/j.prp.2008.01.010
Reference
  Authors
Bodmer D, van den Hurk W, van Groningen JJ, Eleveld MJ, Martens GJ, Weterman MA, van Kessel AG.
  Title
Understanding familial and non-familial renal cell cancer.
  Journal
Hum Mol Genet 11:2489-98 (2002)
DOI:10.1093/hmg/11.20.2489
Reference
  Authors
Kauffman EC, Ricketts CJ, Rais-Bahrami S, Yang Y, Merino MJ, Bottaro DP, Srinivasan R, Linehan WM
  Title
Molecular genetics and cellular features of TFE3 and TFEB fusion kidney cancers.
  Journal
Nat Rev Urol 11:465-75 (2014)
DOI:10.1038/nrurol.2014.162
Reference
  Authors
Skalsky YM, Ajuh PM, Parker C, Lamond AI, Goodwin G, Cooper CS
  Title
PRCC, the commonest TFE3 fusion partner in papillary renal carcinoma is associated with pre-mRNA splicing factors.
  Journal
Oncogene 20:178-87 (2001)
DOI:10.1038/sj.onc.1204056
Reference
  Authors
Medendorp K, van Groningen JJ, Vreede L, Hetterschijt L, Brugmans L, van den Hurk WH, van Kessel AG
  Title
The renal cell carcinoma-associated oncogenic fusion protein PRCCTFE3 provokes p21 WAF1/CIP1-mediated cell cycle delay.
  Journal
Exp Cell Res 315:2399-409 (2009)
DOI:10.1016/j.yexcr.2009.04.022
Related
pathway
umr00020  Citrate cycle (TCA cycle)
umr04010  MAPK signaling pathway
umr04066  HIF-1 signaling pathway
umr04120  Ubiquitin mediated proteolysis
umr04350  TGF-beta signaling pathway
umr04370  VEGF signaling pathway
KO pathway
ko05211   

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