Entry
Name
Endocytosis - Budorcas taxicolor (takin)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Budorcas taxicolor (takin) [GN:
btax ]
Gene
128044524 ZFYVE9; zinc finger FYVE domain-containing protein 9 isoform X1 [KO:K04679 ]
128051193 ZFYVE16; zinc finger FYVE domain-containing protein 16 [KO:K04679 ]
128069789 SH3KBP1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
128070337 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
128050392 EPS15L1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
128045689 EPS15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
128063737 LDLRAP1; low density lipoprotein receptor adapter protein 1 [KO:K12474 ]
128056088 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
128045243 DNAJC6; putative tyrosine-protein phosphatase auxilin [KO:K09526 ]
128054300 LOW QUALITY PROTEIN: F-actin-capping protein subunit alpha-2-like [KO:K10364 ]
128062573 VPS29; vacuolar protein sorting-associated protein 29 [KO:K18467 ]
128060146 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
128047880 VPS26A; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
128063095 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
128064460 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
128059284 VPS28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
128062016 VPS37D; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
128068244 VPS37A; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
128062311 VPS37B; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
128068678 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
128057737 VPS36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
128064933 VPS25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
128065000 CHMP6; charged multivesicular body protein 6 isoform X1 [KO:K12195 ]
128053796 CHMP4A; charged multivesicular body protein 4a isoform X1 [KO:K12194 ]
128052163 CHMP7; charged multivesicular body protein 7 isoform X1 [KO:K15053 ]
128063340 VPS4A; vacuolar protein sorting-associated protein 4A isoform X1 [KO:K12196 ]
128071115 vacuolar protein sorting-associated protein 4A isoform X1 [KO:K12196 ]
128067400 VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
128053290 VTA1; vacuolar protein sorting-associated protein VTA1 homolog isoform X1 [KO:K12199 ]
128048002 PDCD6IP; programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
128053042 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
128050979 H-2 class I histocompatibility antigen, Q10 alpha chain-like [KO:K06751 ]
128055236 LOW QUALITY PROTEIN: BOLA class I histocompatibility antigen, alpha chain BL3-7-like [KO:K06751 ]
128055280 LOW QUALITY PROTEIN: BOLA class I histocompatibility antigen, alpha chain BL3-7-like [KO:K06751 ]
128055281 LOW QUALITY PROTEIN: BOLA class I histocompatibility antigen, alpha chain BL3-7-like [KO:K06751 ]
128055305 BOLA class I histocompatibility antigen, alpha chain BL3-7-like [KO:K06751 ]
128064389 RABEP1; rab GTPase-binding effector protein 1 isoform X1 [KO:K12480 ]
128050574 RUFY1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
128044746 VPS45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
128066401 CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393 ]
128043396 ASAP3; LOW QUALITY PROTEIN: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 [KO:K12488 ]
128059427 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
128055073 ASAP2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 [KO:K12488 ]
128045400 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [KO:K12489 ]
128064868 ACAP1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 [KO:K12489 ]
128061163 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12489 ]
128060132 ARAP1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
128049787 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [KO:K18440 ]
128050452 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 [KO:K12490 ]
128045821 AGAP1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12491 ]
128046424 AGAP3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
128047696 AGAP2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 [KO:K17848 ]
128058438 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
128060026 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
128047478 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 isoform X1 [KO:K12493 ]
128069691 IQSEC2; IQ motif and SEC7 domain-containing protein 2 [KO:K12495 ]
128048019 IQSEC3; IQ motif and SEC7 domain-containing protein 3 [KO:K12495 ]
128062891 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
128058016 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
128059491 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442 ]
128067895 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
btax04060 Cytokine-cytokine receptor interaction
btax04070 Phosphatidylinositol signaling system
btax04130 SNARE interactions in vesicular transport
KO pathway
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