KEGG   PATHWAY: cbrc04622
Entry
cbrc04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Corvus brachyrhynchos (American crow)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
cbrc04622  RIG-I-like receptor signaling pathway
cbrc04622

Organism
Corvus brachyrhynchos (American crow) [GN:cbrc]
Gene
103611252  ADAR; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
103611388  MAPK9; mitogen-activated protein kinase 9 isoform X2 [KO:K04440] [EC:2.7.11.24]
103611483  IL12B; interleukin-12 subunit beta [KO:K05425]
103611844  TKFC; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
103612136  CASP8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
103612146  [KO:K04400] [EC:3.4.22.63]
103612168  TRAF3; TNF receptor-associated factor 3 [KO:K03174]
103613130  [KO:K05414]
103614105  AZI2; 5-azacytidine-induced protein 2 [KO:K12651]
103614707  FADD; FAS-associated death domain protein [KO:K02373]
103614801  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
103614998  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
103615070  DDX3X; ATP-dependent RNA helicase DDX3X [KO:K11594] [EC:5.6.2.7]
103615287  CHUK; LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
103615481  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
103615719  IL12A; interleukin-12 subunit alpha [KO:K05406]
103615872  ZNFX1; LOW QUALITY PROTEIN: NFX1-type zinc finger-containing protein 1 [KO:K27391]
103616425  DDX58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
103617285  [KO:K09578] [EC:5.2.1.8]
103617381  NFKB1; nuclear factor NF-kappa-B p105 subunit [KO:K02580]
103618588  NLRX1; NLR family member X1 isoform X1 [KO:K12653]
103618647  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
103619099  [KO:K10652] [EC:2.3.2.27]
103619243  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
103620171  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
103620313  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
103620365  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
103620899  IRF7; interferon regulatory factor 7 [KO:K09447]
103620910  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
103621011  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
103621121  MAVS; mitochondrial antiviral-signaling protein [KO:K12648]
103621450  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
103622357  MAPK10; mitogen-activated protein kinase 10 isoform X4 [KO:K04440] [EC:2.7.11.24]
103623448  [KO:K04441] [EC:2.7.11.24]
103623493  [KO:K04441] [EC:2.7.11.24]
103623840  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
103623878  [KO:K08601] [EC:3.4.19.12]
103624332  DHX58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
103624489  MAPK8; mitogen-activated protein kinase 8 isoform X2 [KO:K04440] [EC:2.7.11.24]
103624899  TMEM173; stimulator of interferon genes protein isoform X2 [KO:K12654]
103624971  [KO:K10030]
103624972  [KO:K10030]
103624973  [KO:K10030]
103625286  [KO:K04441] [EC:2.7.11.24]
103625335  SIKE1; suppressor of IKBKE 1 [KO:K12656]
103625342  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
103625345  [KO:K04441] [EC:2.7.11.24]
103625573  IFIH1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
108446023  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
108449705  [KO:K05415]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
cbrc04010  MAPK signaling pathway
cbrc04120  Ubiquitin mediated proteolysis
cbrc04210  Apoptosis
KO pathway
ko04622   

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