KEGG   PATHWAY: mlf04120
Entry
mlf04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Myotis lucifugus (little brown bat)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mlf04120  Ubiquitin mediated proteolysis
mlf04120

Other DBs
GO: 0016567
Organism
Myotis lucifugus (little brown bat) [GN:mlf]
Gene
102416898  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
102417626  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
102417730  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
102417963  FBXW7; F-box/WD repeat-containing protein 7 isoform X3 [KO:K10260]
102418005  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
102418471  BIRC6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
102418491  CUL7; cullin-7 isoform X1 [KO:K10613]
102418811  NHLRC1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
102418970  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X2 [KO:K04506] [EC:2.3.2.27]
102419075  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
102419305  [KO:K06689] [EC:2.3.2.23]
102419513  [KO:K10571]
102419523  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
102419798  UBE2I; SUMO-conjugating enzyme UBC9 isoform X2 [KO:K10577]
102419875  RCHY1; LOW QUALITY PROTEIN: RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
102420317  CDC20; LOW QUALITY PROTEIN: cell division cycle protein 20 homolog [KO:K03363]
102420450  [KO:K02977]
102420764  CBLC; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
102420954  UBE2O; LOW QUALITY PROTEIN: (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
102420957  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
102421227  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
102421244  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
102421508  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
102421535  ANAPC5; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 5 [KO:K03352]
102421558  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
102421559  CUL1; cullin-1 isoform X1 [KO:K03347]
102421740  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
102421759  COP1; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
102422279  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
102422384  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
102422419  UBE2A; ubiquitin-conjugating enzyme E2 A isoform X2 [KO:K10573] [EC:2.3.2.23]
102422583  DDB2; DNA damage-binding protein 2 [KO:K10140]
102422685  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
102422710  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X2 [KO:K06689] [EC:2.3.2.23]
102422935  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
102423240  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
102423290  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
102423366  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
102423376  [KO:K04552] [EC:2.3.2.23]
102423647  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X4 [KO:K10601] [EC:2.3.2.27]
102423733  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
102423925  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
102424316  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
102424368  UBE4B; ubiquitin conjugation factor E4 B isoform X9 [KO:K10597] [EC:2.3.2.27]
102424450  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
102424452  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X3 [KO:K10687] [EC:2.3.2.34]
102424628  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
102424647  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
102424919  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
102424998  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
102425034  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
102425338  UBE2J2; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
102425420  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
102425640  ELOB; LOW QUALITY PROTEIN: elongin-B [KO:K03873]
102426121  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
102426236  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
102427034  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
102427630  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
102427664  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
102428108  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
102428111  KLHL13; kelch-like protein 13 isoform X2 [KO:K10447]
102428833  CUL4A; LOW QUALITY PROTEIN: cullin-4A [KO:K10609]
102429006  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X2 [KO:K04553] [EC:2.3.2.23]
102429062  [KO:K10597] [EC:2.3.2.27]
102429174  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
102429224  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
102429283  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
102429293  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
102429679  [KO:K20217] [EC:2.3.2.23]
102429702  [KO:K10583] [EC:2.3.2.23]
102429856  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
102429921  [KO:K10575] [EC:2.3.2.23]
102429983  DET1; DET1 homolog isoform X1 [KO:K10571]
102429993  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
102430294  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
102430357  ANAPC10; anaphase-promoting complex subunit 10 isoform X2 [KO:K03357]
102430695  [KO:K02927]
102430783  [KO:K04506] [EC:2.3.2.27]
102430867  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
102431110  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
102431130  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
102431259  [KO:K03352]
102431403  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
102431653  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
102431849  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
102431943  CDC16; LOW QUALITY PROTEIN: cell division cycle protein 16 homolog [KO:K03353]
102432154  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
102432187  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
102432295  DDB1; LOW QUALITY PROTEIN: DNA damage-binding protein 1 [KO:K10610]
102432374  KEAP1; kelch-like ECH-associated protein 1 isoform X2 [KO:K10456]
102432472  UBB; polyubiquitin-B [KO:K04551]
102432509  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
102432680  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
102432689  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
102432845  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
102433341  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
102433389  FBXW8; F-box/WD repeat-containing protein 8 isoform X2 [KO:K10264]
102433393  AIRE; autoimmune regulator [KO:K10603]
102433786  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
102434055  ELOC; elongin-C isoform X1 [KO:K03872]
102434245  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
102434318  UBE2Z; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
102434739  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
102434930  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
102435198  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
102435240  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
102435561  UBA52; LOW QUALITY PROTEIN: ubiquitin-60S ribosomal protein L40 [KO:K02927]
102435708  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
102435773  [KO:K04552] [EC:2.3.2.23]
102435875  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
102436113  FBXO2; LOW QUALITY PROTEIN: F-box only protein 2 [KO:K10099]
102436214  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
102436262  TRIM32; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
102436570  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
102436579  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X4 [KO:K06689] [EC:2.3.2.23]
102436645  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
102436753  UBA7; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
102436789  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X5 [KO:K10608] [EC:2.3.2.27]
102436804  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
102436922  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
102437090  [KO:K16064] [EC:2.3.2.-]
102437521  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
102437824  KLHL9; kelch-like protein 9 [KO:K10447]
102437959  CUL5; cullin-5 isoform X1 [KO:K10612]
102438621  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
102439283  FANCL; E3 ubiquitin-protein ligase FANCL isoform X3 [KO:K10606] [EC:2.3.2.27]
102439343  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
102439680  [KO:K25228]
102439703  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
102440228  CUL4B; cullin-4B isoform X1 [KO:K10609]
102440857  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
102440998  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
102441105  [KO:K04551]
102441388  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
102441513  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
102441637  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
102441657  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
102441666  CUL3; cullin-3 isoform X1 [KO:K03869]
102441671  [KO:K04506] [EC:2.3.2.27]
102441704  CUL2; cullin-2 isoform X1 [KO:K03870]
102442360  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X2 [KO:K10604] [EC:2.3.2.27]
102442472  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
102442481  UBA1; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
102442500  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
102442669  FBXO4; LOW QUALITY PROTEIN: F-box only protein 4 [KO:K10291]
102442670  [KO:K04551]
102442804  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X2 [KO:K04552] [EC:2.3.2.23]
102442881  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
102443010  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
102443126  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
106694388  [KO:K02927]
106694782  [KO:K02927]
106694783  [KO:K02927]
106695461  [KO:K02927]
106695868  [KO:K02927]
106696261  [KO:K02927]
106698680  [KO:K02927]
111824049  [KO:K02927]
111828258  [KO:K02977]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mlf03050  Proteasome
KO pathway
ko04120   

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