Entry
Name
Endocytosis - Miniopterus natalensis (Natal long-fingered bat)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Miniopterus natalensis (Natal long-fingered bat) [GN:
mna ]
Gene
107535573 PIP5KL1; LOW QUALITY PROTEIN: phosphatidylinositol 4-phosphate 5-kinase-like protein 1 [KO:K13712 ] [EC:2.7.1.68 ]
107530830 LOW QUALITY PROTEIN: AP-1 complex subunit beta-1-like [KO:K11825 ]
107535036 ZFYVE16; zinc finger FYVE domain-containing protein 16 [KO:K04679 ]
107546622 SMAD2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
107526788 SH3KBP1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
107528583 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
107534322 EPS15L1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
107538031 EPS15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
107539784 LDLRAP1; low density lipoprotein receptor adapter protein 1 [KO:K12474 ]
107540948 ARPC1A; actin-related protein 2/3 complex subunit 1A isoform X1 [KO:K05757 ]
107524752 ARPC2; actin-related protein 2/3 complex subunit 2 isoform X1 [KO:K05758 ]
107535481 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
107539014 LOW QUALITY PROTEIN: heat shock 70 kDa protein 1-like [KO:K03283 ]
107533590 DNAJC6; putative tyrosine-protein phosphatase auxilin [KO:K09526 ]
107529932 LOW QUALITY PROTEIN: F-actin-capping protein subunit alpha-1-like [KO:K10364 ]
107531451 LOW QUALITY PROTEIN: F-actin-capping protein subunit beta-like [KO:K10365 ]
107529599 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
107540596 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
107526034 VPS26A; vacuolar protein sorting-associated protein 26A isoform X1 [KO:K18466 ]
107535860 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
107539048 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate [KO:K12182 ]
107542193 TSG101; tumor susceptibility gene 101 protein isoform X1 [KO:K12183 ]
107539994 VPS28; vacuolar protein sorting-associated protein 28 homolog isoform X1 [KO:K12184 ]
107526559 VPS37D; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
107527646 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
107541844 VPS37B; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
107534074 VPS37A; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
107537555 VPS36; vacuolar protein-sorting-associated protein 36 isoform X1 [KO:K12190 ]
107528865 VPS25; vacuolar protein-sorting-associated protein 25 isoform X1 [KO:K12189 ]
107539398 CHMP2A; LOW QUALITY PROTEIN: charged multivesicular body protein 2a [KO:K12191 ]
107545445 VPS4B; vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
107527901 VPS4A; vacuolar protein sorting-associated protein 4A isoform X1 [KO:K12196 ]
107545757 VTA1; vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199 ]
107535725 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
107532895 IL2RG; cytokine receptor common subunit gamma isoform X1 [KO:K05070 ]
107538488 patr class I histocompatibility antigen, A-2 alpha chain-like [KO:K06751 ]
107538961 saoe class I histocompatibility antigen, A alpha chain-like [KO:K06751 ]
107525813 saoe class I histocompatibility antigen, A alpha chain-like [KO:K06751 ]
107546126 LOW QUALITY PROTEIN: BOLA class I histocompatibility antigen, alpha chain BL3-6-like [KO:K06751 ]
107546127 class I histocompatibility antigen, Gogo-C*0101/C*0102 alpha chain-like [KO:K06751 ]
107528441 H-2 class I histocompatibility antigen, Q10 alpha chain-like isoform X1 [KO:K06751 ]
107528426 RUFY1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
107526045 RUFY2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
107539128 VPS45; vacuolar protein sorting-associated protein 45 isoform X1 [KO:K12479 ]
107538414 CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393 ]
107538429 ASAP3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
107526661 ASAP2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 [KO:K12488 ]
107539487 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 [KO:K12488 ]
107544532 ACAP1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 [KO:K12489 ]
107527286 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
107543703 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12489 ]
107533692 ARAP1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
107524252 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [KO:K18440 ]
107531508 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 [KO:K12490 ]
107524903 AGAP3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
107541569 LOW QUALITY PROTEIN: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1-like [KO:K12491 ]
107546231 AGAP2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K17848 ]
107529100 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
107534993 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
107530312 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
107528649 PSD4; LOW QUALITY PROTEIN: PH and SEC7 domain-containing protein 4 [KO:K12494 ]
107542358 IQSEC2; IQ motif and SEC7 domain-containing protein 2 isoform X1 [KO:K12495 ]
107539223 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
107538860 IQSEC3; IQ motif and SEC7 domain-containing protein 3 [KO:K12495 ]
107532167 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
107525229 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
107542573 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
mna04060 Cytokine-cytokine receptor interaction
mna04070 Phosphatidylinositol signaling system
mna04130 SNARE interactions in vesicular transport
KO pathway
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