KEGG   PATHWAY: oki00510
Entry
oki00510                    Pathway                                
Name
N-Glycan biosynthesis - Oncorhynchus kisutch (coho salmon)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
oki00510  N-Glycan biosynthesis
oki00510

Module
oki_M00072  N-glycosylation by oligosaccharyltransferase [PATH:oki00510]
oki_M00073  N-glycan precursor trimming [PATH:oki00510]
oki_M00075  N-glycan biosynthesis, complex type [PATH:oki00510]
Other DBs
GO: 0006487
Organism
Oncorhynchus kisutch (coho salmon) [GN:oki]
Gene
109864386  [KO:K03850] [EC:2.4.1.256]
109864395  alg12; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [KO:K03847] [EC:2.4.1.260]
109864439  alg8; probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X1 [KO:K03849] [EC:2.4.1.265]
109864764  [KO:K00738] [EC:2.4.1.145]
109864789  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109864824  [KO:K00738] [EC:2.4.1.145]
109864969  [KO:K05546] [EC:3.2.1.207]
109865349  alg3; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase isoform X1 [KO:K03845] [EC:2.4.1.258]
109865918  [KO:K09661] [EC:2.4.1.-]
109866558  [KO:K00736] [EC:2.4.1.143]
109866767  [KO:K01230] [EC:3.2.1.113]
109867326  tmem258; transmembrane protein 258 [KO:K26502]
109867489  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109867752  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109868056  man2a1; alpha-mannosidase 2 isoform X1 [KO:K01231] [EC:3.2.1.114]
109868129  dolk; dolichol kinase [KO:K00902] [EC:2.7.1.108]
109868472  dolpp1; dolichyldiphosphatase 1 isoform X1 [KO:K07252] [EC:3.6.1.43]
109868666  [KO:K03844] [EC:2.4.1.131]
109868671  [KO:K09658]
109869196  b4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
109869241  [KO:K00721] [EC:2.4.1.83]
109869275  [KO:K12670]
109869372  man1a2; mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
109870428  [KO:K00779] [EC:2.4.3.1]
109870951  [KO:K01230] [EC:3.2.1.113]
109871155  mgat4a; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [KO:K00738] [EC:2.4.1.145]
109871273  [KO:K00779] [EC:2.4.3.1]
109872214  [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109872527  [KO:K07432] [EC:2.4.1.141]
109872780  [KO:K07151] [EC:2.4.99.18]
109872814  alg9; alpha-1,2-mannosyltransferase ALG9 isoform X1 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
109872878  dpagt1; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [KO:K01001] [EC:2.7.8.15]
109873634  [KO:K07432] [EC:2.4.1.141]
109874061  [KO:K09658]
109874094  [KO:K23741]
109874097  [KO:K07252] [EC:3.6.1.43]
109874222  [KO:K05546] [EC:3.2.1.207]
109874554  [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109875789  alg14; UDP-N-acetylglucosamine transferase subunit ALG14 homolog [KO:K07441] [EC:2.4.1.141]
109877695  [KO:K23741]
109877815  alg2; alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
109878197  [KO:K00779] [EC:2.4.3.1]
109878923  [KO:K03842] [EC:2.4.1.142]
109879001  [KO:K00737] [EC:2.4.1.144]
109879217  [KO:K00736] [EC:2.4.1.143]
109880483  [KO:K19478]
109880497  tusc3; tumor suppressor candidate 3 [KO:K19478]
109882645  [KO:K00717] [EC:2.4.1.68]
109883513  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109883595  [KO:K26502]
109883873  alg5; dolichyl-phosphate beta-glucosyltransferase isoform X1 [KO:K00729] [EC:2.4.1.117]
109884937  [KO:K19478]
109885480  [KO:K00737] [EC:2.4.1.144]
109885732  [KO:K03845] [EC:2.4.1.258]
109885938  [KO:K28202]
109887254  [KO:K00726] [EC:2.4.1.101]
109887934  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109888546  [KO:K09661] [EC:2.4.1.-]
109888720  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109888913  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
109889493  man2a2; alpha-mannosidase 2x isoform X2 [KO:K01231] [EC:3.2.1.114]
109890621  [KO:K00779] [EC:2.4.3.1]
109890636  [KO:K11170] [EC:1.1.1.441]
109890693  [KO:K00744] [EC:2.4.1.155]
109890917  [KO:K12667]
109890995  [KO:K12666]
109892212  [KO:K00737] [EC:2.4.1.144]
109892411  [KO:K01231] [EC:3.2.1.114]
109892718  [KO:K07151] [EC:2.4.99.18]
109893205  [KO:K00737] [EC:2.4.1.144]
109893537  [KO:K09661] [EC:2.4.1.-]
109894124  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109894187  [KO:K01228] [EC:3.2.1.106]
109894294  [KO:K00717] [EC:2.4.1.68]
109895743  [KO:K23741]
109896820  [KO:K03850] [EC:2.4.1.256]
109896837  [KO:K26501]
109897208  [KO:K12666]
109897382  [KO:K09661] [EC:2.4.1.-]
109897500  [KO:K12668]
109898028  srd5a3; polyprenol reductase [KO:K12345] [EC:1.3.1.22 1.3.1.94]
109898239  [KO:K12667]
109900289  [KO:K00717] [EC:2.4.1.68]
109900444  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109900720  [KO:K01230] [EC:3.2.1.113]
109900801  [KO:K00736] [EC:2.4.1.143]
109900946  [KO:K00736] [EC:2.4.1.143]
109901073  [KO:K01228] [EC:3.2.1.106]
109901162  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109901571  [KO:K12668]
109902098  [KO:K00726] [EC:2.4.1.101]
109902111  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
109902135  [KO:K01230] [EC:3.2.1.113]
109902854  [KO:K03848] [EC:2.4.1.267]
109903741  [KO:K07151] [EC:2.4.99.18]
109903802  dpm3; dolichol-phosphate mannosyltransferase subunit 3 [KO:K09659]
109904275  [KO:K00717] [EC:2.4.1.68]
109904669  [KO:K01230] [EC:3.2.1.113]
109905091  [KO:K00738] [EC:2.4.1.145]
109905174  [KO:K07432] [EC:2.4.1.141]
109905223  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
109905263  mgat4b; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [KO:K00738] [EC:2.4.1.145]
109905965  [KO:K00738] [EC:2.4.1.145]
109906634  [KO:K26501]
109906649  [KO:K00744] [EC:2.4.1.155]
109906652  [KO:K03844] [EC:2.4.1.131]
109906689  [KO:K11170] [EC:1.1.1.441]
109907130  [KO:K00726] [EC:2.4.1.101]
109907666  [KO:K07151] [EC:2.4.99.18]
109908066  [KO:K12670]
109908540  [KO:K00721] [EC:2.4.1.83]
109909205  [KO:K00726] [EC:2.4.1.101]
109909400  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
109909789  [KO:K01230] [EC:3.2.1.113]
109910051  [KO:K00778] [EC:2.4.3.1]
116353043  [KO:K03848] [EC:2.4.1.267]
116359271  [KO:K07151] [EC:2.4.99.18]
116371478  [KO:K03842] [EC:2.4.1.142]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
oki00051  Fructose and mannose metabolism
oki00511  Other glycan degradation
oki00513  Various types of N-glycan biosynthesis
oki00515  Mannose type O-glycan biosynthesis
oki00520  Amino sugar and nucleotide sugar metabolism
oki00533  Glycosaminoglycan biosynthesis - keratan sulfate
oki00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
oki00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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