Entry
Name
Endocytosis - Aythya fuligula (tufted duck)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Aythya fuligula (tufted duck) [GN:
aful ]
Gene
116497027 PIP5KL1; LOW QUALITY PROTEIN: phosphatidylinositol 4-phosphate 5-kinase-like protein 1 [KO:K13712 ] [EC:2.7.1.68 ]
116500899 ZFYVE16; zinc finger FYVE domain-containing protein 16 [KO:K04679 ]
116500445 SMAD2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
116493384 SMAD3; mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605 ]
116486119 SH3KBP1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
116490744 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
116498984 EPS15L1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
116491684 EPS15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
116487607 low density lipoprotein receptor adapter protein 1-like isoform X1 [KO:K12474 ]
116498017 LDLRAP1; low density lipoprotein receptor adapter protein 1 isoform X1 [KO:K12474 ]
116496853 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
116491737 DNAJC6; putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526 ]
116497558 CAPZB; F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
116496092 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
116497888 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
116491430 VPS26A; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
116494204 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
116496633 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
116490552 STAM2; signal transducing adapter molecule 2 isoform X1 [KO:K04705 ]
116485760 STAM; signal transducing adapter molecule 1 isoform X1 [KO:K04705 ]
116490243 TSG101; tumor susceptibility gene 101 protein isoform X1 [KO:K12183 ]
116497264 VPS37D; vacuolar protein sorting-associated protein 37D isoform X1 [KO:K12185 ]
116488881 VPS37A; vacuolar protein sorting-associated protein 37A [KO:K12185 ]
116490158 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
116496021 VPS37B; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
116493604 VPS36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
116498462 VPS25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
116494158 VPS4A; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
116486040 VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
116487592 VTA1; vacuolar protein sorting-associated protein VTA1 homolog isoform X1 [KO:K12199 ]
116485504 PDCD6IP; programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
116487931 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
116500260 class I histocompatibility antigen, F10 alpha chain-like isoform X1 [KO:K06751 ]
116500261 class I histocompatibility antigen, F10 alpha chain-like isoform X1 [KO:K06751 ]
116494895 RUFY1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
116491191 RUFY2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
116499754 VPS45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
116488555 RAB11FIP5; rab11 family-interacting protein 5 isoform X1 [KO:K12484 ]
116495130 RAB11FIP3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
116496428 RAB11FIP4; rab11 family-interacting protein 4 isoform X1 [KO:K12485 ]
116497501 CDC42; cell division control protein 42 homolog isoform X1 [KO:K04393 ]
116487410 ASAP2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
116498171 ASAP3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 [KO:K12488 ]
116495740 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like [KO:K12488 ]
116485884 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
116492289 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
116497507 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12489 ]
116502251 ARAP1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
116489266 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [KO:K18440 ]
116494656 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 [KO:K12490 ]
116490752 AGAP1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12491 ]
116486146 AGAP3; LOW QUALITY PROTEIN: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 [KO:K12491 ]
116495570 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
116498486 ARFGAP3; LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
116489684 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
116494921 PSD2; PH and SEC7 domain-containing protein 2 isoform X1 [KO:K12494 ]
116501202 PSD3; PH and SEC7 domain-containing protein 3 isoform X1 [KO:K12494 ]
116502011 IQSEC3; IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
116492987 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
116495559 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 [KO:K18442 ]
116485439 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
116491539 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
aful04060 Cytokine-cytokine receptor interaction
aful04070 Phosphatidylinositol signaling system
aful04130 SNARE interactions in vesicular transport
KO pathway
LinkDB
All DBs