KEGG   PATHWAY: avit04217
Entry
avit04217                   Pathway                                
Name
Necroptosis - Apaloderma vittatum (bar-tailed trogon)
Description
Necroptosis is a programmed form of necrosis. It can be initiated by different stimuli, such as tumor necrosis factor (TNF), TNF-related apoptosis-inducing ligand (TRAIL), Fas ligand (FasL), interferon (IFN), LPS, viral DNA or RNA, DNA-damage agent and requires the kinase activity of receptor-interacting protein 1 (RIPK1) and RIPK3. Its execution involves ROS generation, calcium overload, the opening of the mitochondrial permeability transition pore, mitochondrial fission, inflammatory response and chromatinolysis. Necroptosis participates in many pathogenesis of diseases, including neurological diseases, retinal disorders, acute kidney injury, inflammatory diseases and microbial infections.
Class
Cellular Processes; Cell growth and death
Pathway map
avit04217  Necroptosis
avit04217

Organism
Apaloderma vittatum (bar-tailed trogon) [GN:avit]
Gene
104267410  tumor necrosis factor receptor superfamily member 1A-like [KO:K03158]
104276141  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
104271225  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
104277670  TRAF5; TNF receptor-associated factor 5 [KO:K09849]
104268073  RIPK1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
104278891  inhibitor of apoptosis protein-like [KO:K16060]
104267071  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
104274893  uncharacterized protein LOC104274893 [KO:K17595]
104269581  SPATA2; spermatogenesis-associated protein 2 [KO:K17595]
104279284  LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
104277263  FADD; FAS-associated death domain protein [KO:K02373]
104280785  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
104269999  CFLAR; CASP8 and FADD-like apoptosis regulator [KO:K04724]
104272817  cytochrome b-245 heavy chain [KO:K21421] [EC:1.-.-.-]
104270707  calcium/calmodulin-dependent protein kinase type II subunit alpha [KO:K04515] [EC:2.7.11.17]
104272066  CAMK2D; calcium/calmodulin-dependent protein kinase type II subunit delta [KO:K04515] [EC:2.7.11.17]
104272461  calcium/calmodulin-dependent protein kinase type II subunit gamma-like [KO:K04515] [EC:2.7.11.17]
104269383  ADP/ATP translocase 3 [KO:K05863]
104277163  SLC25A4; LOW QUALITY PROTEIN: ADP/ATP translocase 1 [KO:K05863]
104277857  LOW QUALITY PROTEIN: ADP/ATP translocase 4-like [KO:K05863]
104274874  PPID; peptidyl-prolyl cis-trans isomerase D [KO:K05864] [EC:5.2.1.8]
104268391  VDAC1; voltage-dependent anion-selective channel protein 1 [KO:K05862]
104273602  VDAC2; voltage-dependent anion-selective channel protein 2 isoform X1 [KO:K15040]
104274891  VDAC3; voltage-dependent anion-selective channel protein 3 isoform X1 [KO:K15041]
104268108  glutamate dehydrogenase 1, mitochondrial [KO:K00261] [EC:1.4.1.3]
104273254  glutamate dehydrogenase 1, mitochondrial-like [KO:K00261] [EC:1.4.1.3]
104276664  LOW QUALITY PROTEIN: glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
104277046  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
104278310  PYGB; glycogen phosphorylase, brain form [KO:K00688] [EC:2.4.1.1]
104270528  MAPK8; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
104273048  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
104276958  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
104276892  ferritin heavy chain [KO:K00522] [EC:1.16.3.1]
104270504  LOW QUALITY PROTEIN: cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
104270513  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
104270595  PLA2G4A; cytosolic phospholipase A2 [KO:K16342] [EC:3.1.1.4]
104271203  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
104275261  PLA2G4B; cytosolic phospholipase A2 beta [KO:K16342] [EC:3.1.1.4]
104273500  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
104277600  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
104277601  PLA2G4F; cytosolic phospholipase A2 zeta [KO:K16342] [EC:3.1.1.4]
104277602  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
104269667  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
104272733  CAPN1; calpain-1 catalytic subunit [KO:K01367] [EC:3.4.22.52]
104268653  calpain-2 catalytic subunit [KO:K03853] [EC:3.4.22.53]
104275553  MLKL; mixed lineage kinase domain-like protein [KO:K08849] [EC:2.7.11.1]
104274894  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial [KO:K15637] [EC:3.1.3.16]
104268465  DNM1L; dynamin-1-like protein [KO:K17065] [EC:3.6.5.5]
104272583  IL1B; LOW QUALITY PROTEIN: interleukin-1 beta [KO:K04519]
104275191  charged multivesicular body protein 2b-like [KO:K12192]
104267262  CHMP2B; charged multivesicular body protein 2b [KO:K12192]
104268821  CHMP3; charged multivesicular body protein 3 [KO:K12193]
104274625  CHMP4B; charged multivesicular body protein 4b [KO:K12194]
104275398  CHMP4C; charged multivesicular body protein 4c [KO:K24782]
104274537  CHMP6; charged multivesicular body protein 6 [KO:K12195]
104274663  vacuolar protein sorting-associated protein 4B [KO:K12196]
104272929  CHMP1A; charged multivesicular body protein 1a [KO:K12197]
104280754  CHMP1B; charged multivesicular body protein 1b [KO:K12197]
104274562  CHMP5; charged multivesicular body protein 5 [KO:K12198]
104273869  CHMP7; charged multivesicular body protein 7 [KO:K15053]
104280110  TRPM7; transient receptor potential cation channel subfamily M member 7 [KO:K04982] [EC:2.7.11.1]
104271573  HMGB1; high mobility group protein B1 [KO:K10802]
104267576  TNFSF10; tumor necrosis factor ligand superfamily member 10 [KO:K04721]
104268369  FASLG; tumor necrosis factor ligand superfamily member 6 [KO:K04389]
104270294  tumor necrosis factor receptor superfamily member 6-like [KO:K04390]
104269528  interferon alpha-7-like [KO:K05414]
104277230  interferon gamma-like [KO:K04687]
104274369  IFNAR1; interferon alpha/beta receptor 1 [KO:K05130]
104269622  IFNAR2; interferon alpha/beta receptor 2 [KO:K05131]
104271752  interferon gamma receptor 2-like [KO:K05133]
104275089  JAK1; tyrosine-protein kinase JAK1 [KO:K11217] [EC:2.7.10.2]
104271630  JAK2; tyrosine-protein kinase JAK2 [KO:K04447] [EC:2.7.10.2]
104279797  STAT4; signal transducer and activator of transcription 4 [KO:K11222]
104277283  EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase [KO:K16195] [EC:2.7.11.1]
104272743  TLR4; toll-like receptor 4 [KO:K10160]
104276720  TICAM1; TIR domain-containing adapter molecule 1 [KO:K05842]
104275181  TLR3; toll-like receptor 3 [KO:K05401]
104274219  SQSTM1; sequestosome-1 [KO:K14381]
104272003  HSP90AB1; heat shock protein HSP 90-beta isoform X1 [KO:K04079]
104273780  HSP90AA1; heat shock protein HSP 90-alpha [KO:K04079]
104272149  TNFAIP3; tumor necrosis factor alpha-induced protein 3 [KO:K11859] [EC:3.4.19.12]
104277258  PARP1; poly [ADP-ribose] polymerase 1 [KO:K24070] [EC:2.4.2.30]
104275309  BH3-interacting domain death agonist-like [KO:K04726]
104281104  AIFM1; apoptosis-inducing factor 1, mitochondrial [KO:K04727] [EC:1.-.-.-]
104278806  core histone macro-H2A.2 [KO:K11251]
104276262  core histone macro-H2A.1 isoform X1 [KO:K11251]
104280070  LOW QUALITY PROTEIN: histone H2A-like [KO:K11251]
104273140  histone H2A, sperm-like [KO:K11251]
104269463  histone H2A.Z [KO:K11251]
104278285  histone H2A.J [KO:K11251]
Compound
C00002  ATP
C00027  Hydrogen peroxide
C00076  Calcium cation
C00195  N-Acylsphingosine
C00219  Arachidonate
C00305  Magnesium cation
C00319  Sphingosine
C00550  Sphingomyelin
C14592  N-Methyl-N'-nitro-N-nitrosoguanidine
C16844  Hydroxyl radical
Reference
  Authors
Vandenabeele P, Galluzzi L, Vanden Berghe T, Kroemer G
  Title
Molecular mechanisms of necroptosis: an ordered cellular explosion.
  Journal
Nat Rev Mol Cell Biol 11:700-14 (2010)
DOI:10.1038/nrm2970
Reference
  Authors
Brenner D, Blaser H, Mak TW
  Title
Regulation of tumour necrosis factor signalling: live or let die.
  Journal
Nat Rev Immunol 15:362-74 (2015)
DOI:10.1038/nri3834
Reference
  Authors
Conrad M, Angeli JP, Vandenabeele P, Stockwell BR
  Title
Regulated necrosis: disease relevance and therapeutic opportunities.
  Journal
Nat Rev Drug Discov 15:348-66 (2016)
DOI:10.1038/nrd.2015.6
Reference
  Authors
Ofengeim D, Yuan J
  Title
Regulation of RIP1 kinase signalling at the crossroads of inflammation and cell death.
  Journal
Nat Rev Mol Cell Biol 14:727-36 (2013)
DOI:10.1038/nrm3683
Reference
  Authors
Murphy JM, Vince JE
  Title
Post-translational control of RIPK3 and MLKL mediated necroptotic cell death.
  Journal
F1000Res 4:F1000 Faculty Rev-1297 (2015)
DOI:10.12688/f1000research.7046.1
Reference
  Authors
Vanden Berghe T, Linkermann A, Jouan-Lanhouet S, Walczak H, Vandenabeele P
  Title
Regulated necrosis: the expanding network of non-apoptotic cell death pathways.
  Journal
Nat Rev Mol Cell Biol 15:135-47 (2014)
DOI:10.1038/nrm3737
Reference
  Authors
Dondelinger Y, Hulpiau P, Saeys Y, Bertrand MJ, Vandenabeele P
  Title
An evolutionary perspective on the necroptotic pathway.
  Journal
Trends Cell Biol 26:721-32 (2016)
DOI:10.1016/j.tcb.2016.06.004
Reference
  Authors
Thapa RJ, Ingram JP, Ragan KB, Nogusa S, Boyd DF, Benitez AA, Sridharan H, Kosoff R, Shubina M, Landsteiner VJ, Andrake M, Vogel P, Sigal LJ, tenOever BR, Thomas PG, Upton JW, Balachandran S
  Title
DAI Senses Influenza A Virus Genomic RNA and Activates RIPK3-Dependent Cell Death.
  Journal
Cell Host Microbe 20:674-681 (2016)
DOI:10.1016/j.chom.2016.09.014
Reference
  Authors
Yuan J, Najafov A, Py BF
  Title
Roles of Caspases in Necrotic Cell Death.
  Journal
Cell 167:1693-1704 (2016)
DOI:10.1016/j.cell.2016.11.047
Reference
  Authors
Jorgensen I, Rayamajhi M, Miao EA
  Title
Programmed cell death as a defence against infection.
  Journal
Nat Rev Immunol 17:151-164 (2017)
DOI:10.1038/nri.2016.147
Reference
  Authors
Vandenabeele P, Declercq W, Van Herreweghe F, Vanden Berghe T
  Title
The role of the kinases RIP1 and RIP3 in TNF-induced necrosis.
  Journal
Sci Signal 3:re4 (2010)
DOI:10.1126/scisignal.3115re4
Reference
  Authors
Vanlangenakker N, Vanden Berghe T, Vandenabeele P
  Title
Many stimuli pull the necrotic trigger, an overview.
  Journal
Cell Death Differ 19:75-86 (2012)
DOI:10.1038/cdd.2011.164
Reference
  Authors
Moriwaki K, Chan FK
  Title
RIP3: a molecular switch for necrosis and inflammation.
  Journal
Genes Dev 27:1640-9 (2013)
DOI:10.1101/gad.223321.113
Reference
  Authors
Humphries F, Yang S, Wang B, Moynagh PN
  Title
RIP kinases: key decision makers in cell death and innate immunity.
  Journal
Cell Death Differ 22:225-36 (2015)
DOI:10.1038/cdd.2014.126
Reference
  Authors
Wegner KW, Saleh D, Degterev A
  Title
Complex Pathologic Roles of RIPK1 and RIPK3: Moving Beyond Necroptosis.
  Journal
Trends Pharmacol Sci 38:202-225 (2017)
DOI:10.1016/j.tips.2016.12.005
Reference
  Authors
Kupka S, De Miguel D, Draber P, Martino L, Surinova S, Rittinger K, Walczak H
  Title
SPATA2-Mediated Binding of CYLD to HOIP Enables CYLD Recruitment to Signaling Complexes.
  Journal
Cell Rep 16:2271-80 (2016)
DOI:10.1016/j.celrep.2016.07.086
Reference
  Authors
Goodall ML, Fitzwalter BE, Zahedi S, Wu M, Rodriguez D, Mulcahy-Levy JM, Green DR, Morgan M, Cramer SD, Thorburn A
  Title
The Autophagy Machinery Controls Cell Death Switching between Apoptosis and Necroptosis.
  Journal
Dev Cell 37:337-49 (2016)
DOI:10.1016/j.devcel.2016.04.018
Reference
  Authors
Xu G, Tan X, Wang H, Sun W, Shi Y, Burlingame S, Gu X, Cao G, Zhang T, Qin J, Yang J
  Title
Ubiquitin-specific peptidase 21 inhibits tumor necrosis factor alpha-induced nuclear factor kappaB activation via binding to and deubiquitinating receptor-interacting protein 1.
  Journal
J Biol Chem 285:969-78 (2010)
DOI:10.1074/jbc.M109.042689
Reference
  Authors
Jacobsen AV, Silke J
  Title
The importance of being chaperoned: HSP90 and necroptosis.
  Journal
Cell Chem Biol 23:205-7 (2016)
DOI:10.1016/j.chembiol.2016.02.003
Reference
  Authors
Gurung P, Man SM, Kanneganti TD
  Title
A20 is a regulator of necroptosis.
  Journal
Nat Immunol 16:596-7 (2015)
DOI:10.1038/ni.3174
Reference
  Authors
Feng N, Anderson ME
  Title
CaMKII is a nodal signal for multiple programmed cell death pathways in heart.
  Journal
J Mol Cell Cardiol 103:102-109 (2017)
DOI:10.1016/j.yjmcc.2016.12.007
Reference
  Authors
Zhivotovsky B, Galluzzi L, Kepp O, Kroemer G
  Title
Adenine nucleotide translocase: a component of the phylogenetically conserved cell death machinery.
  Journal
Cell Death Differ 16:1419-25 (2009)
DOI:10.1038/cdd.2009.118
Reference
  Authors
Thapa RJ, Nogusa S, Chen P, Maki JL, Lerro A, Andrake M, Rall GF, Degterev A, Balachandran S
  Title
Interferon-induced RIP1/RIP3-mediated necrosis requires PKR and is licensed by FADD and caspases.
  Journal
Proc Natl Acad Sci U S A 110:E3109-18 (2013)
DOI:10.1073/pnas.1301218110
Reference
  Authors
Thapa RJ, Basagoudanavar SH, Nogusa S, Irrinki K, Mallilankaraman K, Slifker MJ, Beg AA, Madesh M, Balachandran S
  Title
NF-kappaB protects cells from gamma interferon-induced RIP1-dependent necroptosis.
  Journal
Mol Cell Biol 31:2934-46 (2011)
DOI:10.1128/MCB.05445-11
Reference
  Authors
Sridharan H, Upton JW
  Title
Programmed necrosis in microbial pathogenesis.
  Journal
Trends Microbiol 22:199-207 (2014)
DOI:10.1016/j.tim.2014.01.005
Reference
  Authors
Cabon L, Galan-Malo P, Bouharrour A, Delavallee L, Brunelle-Navas MN, Lorenzo HK, Gross A, Susin SA
  Title
BID regulates AIF-mediated caspase-independent necroptosis by promoting BAX activation.
  Journal
Cell Death Differ 19:245-56 (2012)
DOI:10.1038/cdd.2011.91
Reference
  Authors
Baritaud M, Boujrad H, Lorenzo HK, Krantic S, Susin SA
  Title
Histone H2AX: The missing link in AIF-mediated caspase-independent programmed necrosis.
  Journal
Cell Cycle 9:3166-73 (2010)
DOI:10.4161/cc.9.16.12887
Reference
  Authors
Upton JW, Kaiser WJ
  Title
DAI Another Way: Necroptotic Control of Viral Infection.
  Journal
Cell Host Microbe 21:290-293 (2017)
DOI:10.1016/j.chom.2017.01.016
Reference
  Authors
Silke J, Rickard JA, Gerlic M
  Title
The diverse role of RIP kinases in necroptosis and inflammation.
  Journal
Nat Immunol 16:689-97 (2015)
DOI:10.1038/ni.3206
Reference
  Authors
Guo H, Kaiser WJ
  Title
ESCRTing Necroptosis.
  Journal
Cell 169:186-187 (2017)
DOI:10.1016/j.cell.2017.03.030
Reference
  Authors
Gong YN, Guy C, Olauson H, Becker JU, Yang M, Fitzgerald P, Linkermann A, Green DR
  Title
ESCRT-III Acts Downstream of MLKL to Regulate Necroptotic Cell Death and Its Consequences.
  Journal
Cell 169:286-300.e16 (2017)
DOI:10.1016/j.cell.2017.03.020
Reference
  Authors
Petrie EJ, Hildebrand JM, Murphy JM
  Title
Insane in the membrane: a structural perspective of MLKL function in necroptosis.
  Journal
Immunol Cell Biol 95:152-159 (2017)
DOI:10.1038/icb.2016.125
Reference
  Authors
Cai Z, Jitkaew S, Zhao J, Chiang HC, Choksi S, Liu J, Ward Y, Wu LG, Liu ZG
  Title
Plasma membrane translocation of trimerized MLKL protein is required for TNF-induced necroptosis.
  Journal
Nat Cell Biol 16:55-65 (2014)
DOI:10.1038/ncb2883
Reference
  Authors
Lawlor KE, Khan N, Mildenhall A, Gerlic M, Croker BA, D'Cruz AA, Hall C, Kaur Spall S, Anderton H, Masters SL, Rashidi M, Wicks IP, Alexander WS, Mitsuuchi Y, Benetatos CA, Condon SM, Wong WW, Silke J, Vaux DL, Vince JE
  Title
RIPK3 promotes cell death and NLRP3 inflammasome activation in the absence of MLKL.
  Journal
Nat Commun 6:6282 (2015)
DOI:10.1038/ncomms7282
Reference
  Authors
Shlomovitz I, Zargrian S, Gerlic M
  Title
Mechanisms of RIPK3-induced inflammation.
  Journal
Immunol Cell Biol 95:166-172 (2017)
DOI:10.1038/icb.2016.124
Related
pathway
avit00250  Alanine, aspartate and glutamate metabolism
avit04210  Apoptosis
KO pathway
ko04217   
LinkDB

DBGET integrated database retrieval system