KEGG   PATHWAY: cam03018
Entry
cam03018                    Pathway                                
Name
RNA degradation - Cicer arietinum (chickpea)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cam03018  RNA degradation
cam03018

Other DBs
GO: 0006401
Organism
Cicer arietinum (chickpea) [GN:cam]
Gene
101510142  uncharacterized LOC101510142 [KO:K07573]
101506177  exosome complex component RRP4 [KO:K03679]
101506424  uncharacterized LOC101506424 [KO:K03681]
101504662  putative exosome complex component rrp40 [KO:K03681]
101491819  exosome complex component RRP40-like [KO:K03681]
101501810  exosome complex component RRP43 [KO:K12586]
101497104  exosome complex component MTR3 [KO:K12587]
101492547  exosome complex component RRP42-like [KO:K12589]
101491925  exosome complex component RRP42-like [KO:K12589]
101500832  exosome complex component RRP41 [KO:K11600]
101499023  exosome complex exonuclease RRP46 homolog [KO:K12590]
101515009  protein RRP45A-like [KO:K03678]
101496147  DIS3; exosome complex exonuclease RRP44 [KO:K12585] [EC:3.1.13.-]
101498997  exosome component 10 [KO:K12591] [EC:3.1.13.-]
101492954  exosome component 10-like [KO:K12591] [EC:3.1.13.-]
101505547  nuclear nucleic acid-binding protein C1D-like [KO:K12592]
101514368  uncharacterized LOC101514368 [KO:K12592]
101504301  uncharacterized LOC101504301 [KO:K12593]
101491282  uncharacterized LOC101491282 [KO:K12593]
101507447  non-canonical poly(A) RNA polymerase PAPD5 [KO:K03514] [EC:2.7.7.19]
101507765  SKIV2L2; superkiller viralicidic activity 2-like 2 [KO:K12598] [EC:5.6.2.6]
101515118  ATP-dependent RNA helicase DOB1-like [KO:K12598] [EC:5.6.2.6]
101505143  protein HUA ENHANCER 2 [KO:K12598] [EC:5.6.2.6]
101510275  ATP-dependent RNA helicase SKI2 [KO:K12599] [EC:5.6.2.6]
101514208  tetratricopeptide repeat protein SKI3 [KO:K12600]
101502792  WD repeat-containing protein VIP3 [KO:K12602]
101492293  carbon catabolite repressor protein 4 homolog 2-like [KO:K12603] [EC:3.1.13.4]
101498471  carbon catabolite repressor protein 4 homolog 4-like [KO:K12603] [EC:3.1.13.4]
101512617  carbon catabolite repressor protein 4 homolog 2-like [KO:K12603] [EC:3.1.13.4]
101499438  CCR4-NOT transcription complex subunit 1 [KO:K12604]
101493019  probable NOT transcription complex subunit VIP2 [KO:K12605]
101490632  probable NOT transcription complex subunit VIP2 [KO:K12605]
101501985  CCR4-NOT transcription complex subunit 3 [KO:K12580]
101497329  general negative regulator of transcription subunit 4-like [KO:K10643] [EC:2.3.2.27]
101515008  uncharacterized LOC101515008 [KO:K10643] [EC:2.3.2.27]
101497319  uncharacterized LOC101497319 [KO:K10643] [EC:2.3.2.27]
101496250  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
105852275  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
101511554  probable CCR4-associated factor 1 homolog 9 [KO:K12581]
101509087  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
101497383  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
101514715  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
105851178  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
101514705  probable CCR4-associated factor 1 homolog 7 [KO:K12581]
101501518  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
101496386  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
101510373  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
101497860  probable CCR4-associated factor 1 homolog 11 [KO:K12581]
101489736  cell differentiation protein RCD1 homolog [KO:K12606]
101496089  cell differentiation protein RCD1 homolog [KO:K12606]
101511188  cell differentiation protein RCD1 homolog [KO:K12606]
101496909  CCR4-NOT transcription complex subunit 10-A [KO:K12607]
101495531  ABC transporter I family member 21 [KO:K12608]
101502544  ABC transporter I family member 20 [KO:K12608]
101503939  ATP-dependent RNA helicase DHX36 [KO:K14442] [EC:5.6.2.6]
101501805  DHX36; ATP-dependent RNA helicase DHX36 [KO:K14442] [EC:5.6.2.6]
101491411  ATP-dependent RNA helicase DHX36 [KO:K14442] [EC:5.6.2.6]
101507100  ATP-dependent RNA helicase DHX36 [KO:K14442] [EC:5.6.2.6]
101488704  ATP-dependent RNA helicase DHX36-like [KO:K14442] [EC:5.6.2.6]
101498065  uncharacterized CRM domain-containing protein At3g25440, chloroplastic [KO:K01148] [EC:3.1.13.4]
101495869  poly(A)-specific ribonuclease PARN [KO:K01148] [EC:3.1.13.4]
101491106  poly(A)-specific ribonuclease PARN-like [KO:K01148] [EC:3.1.13.4]
101513680  30S ribosomal protein 2, chloroplastic [KO:K13126]
101505767  polyadenylate-binding protein 3-like [KO:K13126]
101502456  polyadenylate-binding protein 2-like [KO:K13126]
101512740  polyadenylate-binding protein 8-like [KO:K13126]
101505043  polyadenylate-binding protein 2 [KO:K13126]
101515641  polyadenylate-binding protein 7 [KO:K13126]
101500373  mRNA-decapping enzyme-like protein [KO:K12611] [EC:3.-.-.-]
101492629  mRNA-decapping enzyme-like protein [KO:K12611] [EC:3.-.-.-]
101506944  mRNA-decapping enzyme subunit 2 [KO:K12613] [EC:3.6.1.62]
101498356  DEAD-box ATP-dependent RNA helicase 8 [KO:K12614] [EC:5.6.2.7]
101514088  DEAD-box ATP-dependent RNA helicase 8-like [KO:K12614] [EC:5.6.2.7]
101501624  enhancer of mRNA-decapping protein 4-like [KO:K12616]
101499690  enhancer of mRNA-decapping protein 4 [KO:K12616]
101501230  uncharacterized LOC101501230 [KO:K12617]
101500903  uncharacterized LOC101500903 [KO:K12617]
101512706  uncharacterized LOC101512706 [KO:K12617]
101510269  5'-3' exoribonuclease 3 [KO:K12619] [EC:3.1.13.-]
101493570  sm-like protein LSM1B [KO:K12620]
101501650  sm-like protein LSM1B [KO:K12620]
101498034  sm-like protein LSM2 [KO:K12621]
105851817  sm-like protein LSM2 [KO:K12621]
101510224  sm-like protein LSM3A [KO:K12622]
101511529  probable U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
101496854  sm-like protein LSM4 [KO:K12623]
101496347  sm-like protein LSM5 [KO:K12624]
101499288  sm-like protein LSM36B [KO:K12625]
101491551  sm-like protein LSM7 [KO:K12626]
101498142  sm-like protein LSM8 [KO:K12627]
101489467  enolase 1, chloroplastic [KO:K01689] [EC:4.2.1.11]
101497047  enolase-like [KO:K01689] [EC:4.2.1.11]
101509171  enolase [KO:K01689] [EC:4.2.1.11]
101499647  cytosolic enolase 3 [KO:K01689] [EC:4.2.1.11]
101490003  polyribonucleotide nucleotidyltransferase 2, mitochondrial [KO:K00962] [EC:2.7.7.8]
101497377  probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [KO:K00962] [EC:2.7.7.8]
101490066  putative ATP-dependent DNA helicase Q1 [KO:K03654] [EC:5.6.2.4]
101498436  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
101502189  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
101512819  ATP-dependent 6-phosphofructokinase 4, chloroplastic [KO:K00850] [EC:2.7.1.11]
101488978  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
101497369  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
101492135  ATP-dependent 6-phosphofructokinase 5, chloroplastic-like [KO:K00850] [EC:2.7.1.11]
101514136  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
101491465  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
101502220  ATP-dependent 6-phosphofructokinase 6-like [KO:K00850] [EC:2.7.1.11]
101491898  heat shock 70 kDa protein, mitochondrial [KO:K04043]
101502051  heat shock 70 kDa protein, mitochondrial [KO:K04043]
101512130  ruBisCO large subunit-binding protein subunit beta, chloroplastic [KO:K04077] [EC:5.6.1.7]
101506252  chaperonin 60 subunit beta 4, chloroplastic [KO:K04077] [EC:5.6.1.7]
101495552  ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [KO:K04077] [EC:5.6.1.7]
101509467  chaperonin CPN60-like 2, mitochondrial [KO:K04077] [EC:5.6.1.7]
101510250  chaperonin CPN60-2, mitochondrial-like [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
cam03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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