KEGG   PATHWAY: cel03040
Entry
cel03040                    Pathway                                
Name
Spliceosome - Caenorhabditis elegans (nematode)
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
cel03040  Spliceosome
cel03040

Other DBs
GO: 0005681
Organism
Caenorhabditis elegans (nematode) [GN:cel]
Gene
CELE_C05G6.4  C05G6.4; small nuclear RNA C05G6.4 [KO:K14277]
CELE_C52E4.8  C52E4.8; small nuclear RNA C52E4.8 [KO:K14278]
CELE_T11F9.16  T11F9.16; small nuclear RNA T11F9.16 [KO:K14278]
CELE_F07C6.5  F07C6.5; small nuclear RNA F07C6.5 [KO:K14279]
CELE_F54C8.10  F54C8.10; small nuclear RNA F54C8.10 [KO:K14280]
CELE_K09B11.19  K09B11.19; Unclassified non-coding RNA K09B11.19 [KO:K14280]
CELE_C28A5.7  C28A5.7; small nuclear RNA C28A5.7 [KO:K14280]
CELE_F53H1.1  ddx-46; RNA helicase [KO:K12811] [EC:5.6.2.7]
CELE_C26D10.2  hel-1; Spliceosome RNA helicase DDX39B homolog [KO:K12812] [EC:5.6.2.7]
CELE_C04H5.6  mog-4; putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 [KO:K12813] [EC:5.6.2.6]
CELE_K03H1.2  mog-1; putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 [KO:K12815] [EC:5.6.2.6]
CELE_F49D11.1  prp-17; WD_REPEATS_REGION domain-containing protein [KO:K12816]
CELE_F32B6.3  prp-18; Pre-mRNA-splicing factor 18 [KO:K12817]
CELE_EEED8.5  mog-5; putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 [KO:K12818] [EC:5.6.2.6]
CELE_K07C5.6  sluh-7; Pre-mRNA-splicing factor SLU7 [KO:K12819]
CELE_F56D2.6  ddx-15; Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [KO:K12820] [EC:5.6.2.6]
CELE_W08E3.1  snr-2; putative small nuclear ribonucleoprotein-associated protein B [KO:K11086]
CELE_T28D9.10  snr-3; putative small nuclear ribonucleoprotein Sm D1 [KO:K11087]
CELE_C52E4.3  snr-4; putative small nuclear ribonucleoprotein Sm D2 [KO:K11096]
CELE_Y116A8C.42  snr-1; Small nuclear ribonucleoprotein Sm D3 [KO:K11088]
CELE_Y49E10.15  snr-6; putative small nuclear ribonucleoprotein E [KO:K11097]
CELE_ZK652.1  snr-5; putative small nuclear ribonucleoprotein F [KO:K11098]
CELE_Y71F9B.4  snr-7; putative small nuclear ribonucleoprotein G [KO:K11099]
CELE_K04G7.10  rnp-7; U1 small nuclear ribonucleoprotein 70 kDa [KO:K11093]
CELE_F08B4.7  snrp-3; U1 small nuclear ribonucleoprotein C [KO:K11095]
CELE_ZK1098.1  prp-40; WW domain-containing protein ZK1098.1 [KO:K12821]
CELE_W04D2.6  rbm-25; RRM domain-containing protein [KO:K12822]
CELE_F58E10.3  ddx-17; RNA helicase [KO:K12823] [EC:5.6.2.7]
CELE_ZK1127.9  tcer-1; WW domain-containing protein [KO:K12824]
CELE_H20J04.8  mog-2; putative U2 small nuclear ribonucleoprotein A' [KO:K11092]
CELE_K08D10.3  rnp-3; RRM domain-containing protein [KO:K11094]
CELE_K08D10.4  rnp-2; RRM domain-containing protein [KO:K11094]
CELE_W07E6.4  prp-21; uncharacterized protein [KO:K12825]
CELE_F11A10.2  repo-1; Matrin-type domain-containing protein [KO:K12826]
CELE_T13H5.4  prp-9; Matrin-type domain-containing protein [KO:K12827]
CELE_T08A11.2  sftb-1; Splicing factor 3B subunit 1 domain-containing protein [KO:K12828]
CELE_W03F9.10  sftb-2; PSP proline-rich domain-containing protein [KO:K12829]
CELE_K02F2.3  teg-4; Splicing factor 3B subunit 3 [KO:K12830]
CELE_C08B11.5  sap-49; Splicing factor 3B subunit 4 [KO:K12831]
CELE_C50D2.5  sftb-6; Splicing factor 3B subunit 6-like protein [KO:K12833]
CELE_Y54F10BM.14  phf-5; PHD finger-like domain-containing protein 5A [KO:K12834]
CELE_C46F11.4  C46F11.4; RNA helicase [KO:K12835] [EC:5.6.2.7]
CELE_Y116A8C.35  uaf-2; Splicing factor U2AF 35 kDa subunit [KO:K12836]
CELE_Y92C3B.2  uaf-1; Splicing factor U2AF 65 kDa subunit [KO:K12837]
CELE_Y47G6A.20  rnp-6; Poly(U)-binding-splicing factor rnp-6 [KO:K12838]
CELE_Y71D11A.2  smr-1; Tudor domain-containing protein [KO:K12839]
CELE_F58B3.7  rbm-17; Splicing factor 45 [KO:K12840]
CELE_F58G11.5  tag-65; CID domain-containing protein [KO:K12841]
CELE_C07H6.4  sap-140; U2 snRNP-associated SURP motif-containing protein [KO:K12842]
CELE_T10G3.6  gut-2; U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
CELE_Y62E10A.12  lsm-3; U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
CELE_F32A5.7  lsm-4; putative U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
CELE_F28F8.3  lsm-5; U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
CELE_Y71G12B.14  lsm-6; Sm domain-containing protein [KO:K12625]
CELE_ZK593.7  lsm-7; Sm domain-containing protein [KO:K12626]
CELE_Y73B6BL.32  lsm-8; U6 snRNA-associated Sm-like protein LSm8 [KO:K12627]
CELE_M03C11.7  prp-3; U4/U6 small nuclear ribonucleoprotein Prp3 [KO:K12843]
CELE_C36B1.5  prp-4; Pre-mRNA processing factor 4 (PRP4)-like domain-containing protein [KO:K12662]
CELE_T01B7.4  cyn-11; Peptidyl-prolyl cis-trans isomerase 11 [KO:K09567] [EC:5.2.1.8]
CELE_Y110A7A.8  prp-31; U4/U6 small nuclear ribonucleoprotein Prp31 [KO:K12844]
CELE_M28.5  snu-13; NHP2-like protein 1 homolog [KO:K12845]
CELE_R05D11.7  snrp-27; U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [KO:K12846]
CELE_F09D1.1  usp-39; ubiquitinyl hydrolase 1 [KO:K12847]
CELE_F19F10.9  snu-66; uncharacterized protein [KO:K11984]
CELE_ZK686.4  snu-23; Putative zinc finger matrin-type protein snu-23 [KO:K12848]
CELE_D1054.14  prp-38; Pre-mRNA-splicing factor 38 [KO:K12849]
CELE_Y108G3AL.2  Y108G3AL.2; Pre-mRNA-splicing factor 38 [KO:K12850]
CELE_ZK328.2  eftu-2; Tr-type G domain-containing protein [KO:K12852]
CELE_Y46G5A.4  snrp-200; U5 small nuclear ribonucleoprotein 200 kDa helicase [KO:K12854] [EC:5.6.2.6]
CELE_Y59A8B.6  prp-6; Pre-mRNA-processing factor 6 [KO:K12855]
CELE_C50C3.6  prp-8; Pre-mRNA-splicing factor 8 homolog [KO:K12856]
CELE_F08G12.2  snrp-40.1; WD_REPEATS_REGION domain-containing protein [KO:K12857]
CELE_C18E3.5  snrp-40.2; WD_REPEATS_REGION domain-containing protein [KO:K12857]
CELE_F01F1.7  ddx-23; RNA helicase [KO:K12858] [EC:5.6.2.7]
CELE_Y54G2A.75  dib-1; Thioredoxin-like protein [KO:K12859]
CELE_T10F2.4  prp-19; Pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
CELE_D1081.8  cdc-5L; Cell division cycle 5-like protein [KO:K12860]
CELE_T12A2.7  bcas-2; Pre-mRNA-splicing factor SPF27 [KO:K12861]
CELE_D1054.15  plrg-1; WD_REPEATS_REGION domain-containing protein [KO:K12862]
CELE_T10C6.5  cwc-15; Spliceosome-associated protein CWC15 homolog [KO:K12863]
CELE_M01E11.2  ctnb-1; Beta-catenin-like protein 1 N-terminal domain-containing protein [KO:K12864]
CELE_F26D10.3  hsp-1; Heat shock protein hsp-1 [KO:K03283]
CELE_F44E5.4  F44E5.4; Heat shock protein 70 [KO:K03283]
CELE_C12C8.1  hsp-70; Heat shock protein 70 [KO:K03283]
CELE_F44E5.5  F44E5.5; Heat shock protein 70 [KO:K03283]
CELE_F11F1.1  F11F1.1; DUF148 domain-containing protein [KO:K03283]
CELE_T21D12.3  pqbp-1.1; WW domain-containing protein [KO:K12865]
CELE_F33H1.3  wbp-11; Ww (WW) domain Binding Protein [KO:K12866]
CELE_T27F2.1  skp-1; mammalian SKIP (Ski interacting protein) homolog [KO:K06063]
CELE_C50F2.3  syf-1; Pre-mRNA-splicing factor SYF1 [KO:K12867]
CELE_K04G7.11  syf-2; Pre-mRNA-splicing factor syf-2 [KO:K12868]
CELE_M03F8.3  syf-3; TPR_REGION domain-containing protein [KO:K12869]
CELE_F53B7.3  isy-1; Protein isy-1 [KO:K12870]
CELE_C34D4.12  cyn-12; Peptidyl-prolyl cis-trans isomerase [KO:K12733] [EC:5.2.1.8]
CELE_Y116A8C.34  cyn-13; Peptidyl-prolyl cis-trans isomerase E [KO:K09564] [EC:5.2.1.8]
CELE_Y69A2AR.21  ccdc-12; Coiled-coil domain-containing protein 12 [KO:K12871]
CELE_C07A9.2  bud-31; Protein BUD31 homolog [KO:K12873]
CELE_Y80D3A.2  emb-4; Intron-binding protein aquarius [KO:K12874]
CELE_C43E11.1  acin-1; SAP domain-containing protein [KO:K12875]
CELE_Y65B4A.6  eif-4A3; RNA helicase [KO:K13025] [EC:5.6.2.7]
CELE_F33D11.10  F33D11.10; RNA helicase [KO:K13025] [EC:5.6.2.7]
CELE_R07E5.14  rnp-4; RNA-binding protein rnp-4 [KO:K12876]
CELE_R09B3.5  mag-1; Protein mago nashi homolog [KO:K12877]
CELE_T02H6.2  thoc-1; Death domain-containing protein [KO:K12878]
CELE_C16A3.8  thoc-2; THO complex subunit 2 [KO:K12879]
CELE_F32H2.4  thoc-3; WD_REPEATS_REGION domain-containing protein [KO:K12880]
CELE_C01F6.5  aly-1; Chromatin target of PRMT1 protein C-terminal domain-containing protein [KO:K12881]
CELE_M18.7  aly-3; Chromatin target of PRMT1 protein C-terminal domain-containing protein [KO:K12881]
CELE_C02B10.4  C02B10.4; RRM domain-containing protein [KO:K12881]
CELE_F23B2.6  aly-2; Chromatin target of PRMT1 protein C-terminal domain-containing protein [KO:K12881]
CELE_F37E3.1  ncbp-1; Nuclear cap-binding protein subunit 1 [KO:K12882]
CELE_F26A3.2  ncbp-2; Nuclear cap-binding protein subunit 2 [KO:K12883]
CELE_F42A6.7  hrpa-1; Heterogeneous nuclear ribonucleoprotein A1 [KO:K12741]
CELE_F26B1.2  hrpk-1; Heterogeneous nuclear ribonucleoprotein K homolog [KO:K12886]
CELE_Y111B2A.18  rsp-3; putative splicing factor, arginine/serine-rich 3 [KO:K12890]
CELE_EEED8.7  rsp-4; putative splicing factor, arginine/serine-rich 4 [KO:K12891]
CELE_W02B12.3  rsp-1; putative splicing factor, arginine/serine-rich 1 [KO:K12893]
CELE_W02B12.2  rsp-2; putative splicing factor, arginine/serine-rich 2 [KO:K12893]
CELE_C33H5.12  rsp-6; putative splicing factor, arginine/serine-rich 6 [KO:K12896]
CELE_C18D11.4  rsp-8; RRM domain-containing protein [KO:K12897]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   
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