KEGG   PATHWAY: mamb04120
Entry
mamb04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Megalobrama amblycephala (Wuchang bream)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mamb04120  Ubiquitin mediated proteolysis
mamb04120

Other DBs
GO: 0016567
Organism
Megalobrama amblycephala (Wuchang bream) [GN:mamb]
Gene
125262392  ubc; polyubiquitin-C [KO:K08770]
125267042  ubb; polyubiquitin-B [KO:K08770]
125247616  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
125247628  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
125251345  uba52; LOW QUALITY PROTEIN: ubiquitin-60S ribosomal protein L40 [KO:K02927]
125274134  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
125277552  ubiquitin-40S ribosomal protein S27a [KO:K02977]
125259682  uba1; LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
125273613  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
125249183  sae1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
125247463  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
125256805  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
125272599  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
125269979  ube2al; ubiquitin conjugating enzyme E2 A, like isoform X1 [KO:K10573] [EC:2.3.2.23]
125258735  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
125253091  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
125273344  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
125259187  ube2d2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
125259296  ube2d2l; ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like isoform X1 [KO:K06689] [EC:2.3.2.23]
125280450  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
125254995  ube2d1b; ubiquitin-conjugating enzyme E2 D1b [KO:K06689] [EC:2.3.2.23]
125268855  ube2d1a; ubiquitin-conjugating enzyme E2 D1a [KO:K06689] [EC:2.3.2.23]
125276400  ube2d3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
125270652  ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
125244134  ube2e2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
125275263  ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
125272838  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
125252748  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
125266785  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
125274212  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
125246247  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
125257965  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
125270226  ube2ia; SUMO-conjugating enzyme UBC9-B [KO:K10577]
125273741  SUMO-conjugating enzyme UBC9-like [KO:K10577]
125277742  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
125259958  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
125257145  ubiquitin-conjugating enzyme E2 J2-like [KO:K04554] [EC:2.3.2.23]
125272665  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
125267487  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
125262490  ube2l3a; ubiquitin-conjugating enzyme E2 L3a [KO:K04552] [EC:2.3.2.23]
125267342  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
125274642  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
125244340  ube2nb; ubiquitin-conjugating enzyme E2Nb [KO:K10580] [EC:2.3.2.23]
125254826  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
125274246  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
125247151  ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
125254060  ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
125274772  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
125252160  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
125263829  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
125250173  cdc34b; cell division cycle 34 homolog (S. cerevisiae) b [KO:K02207] [EC:2.3.2.23]
125243657  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
125251079  ube2wa; probable ubiquitin-conjugating enzyme E2 W-A [KO:K10688] [EC:2.3.2.23 2.3.2.25]
125257534  ube2wb; probable ubiquitin-conjugating enzyme E2 W-B [KO:K10688] [EC:2.3.2.23 2.3.2.25]
125273017  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
125268728  birc6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
125273650  ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
125267205  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
125264965  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
125250679  smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
125269562  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
125259522  itchb; itchy E3 ubiquitin protein ligase b [KO:K05632] [EC:2.3.2.26]
125273364  itcha; itchy E3 ubiquitin protein ligase a isoform X1 [KO:K05632] [EC:2.3.2.26]
125252341  NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
125246534  wwp2; LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
125254713  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
125253734  nedd4a; E3 ubiquitin-protein ligase NEDD4a isoform X1 [KO:K10591] [EC:2.3.2.26]
125252725  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
125260128  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
125244005  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
125252611  LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
125264681  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
125273660  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
125271920  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
125276489  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
125249732  ube4a; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
125260086  ube4b; LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
125257466  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
125267335  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
125259142  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
125280033  ubox5; RING finger protein 37 isoform X1 [KO:K10600]
125244871  mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
125248189  cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
125248821  E3 ubiquitin-protein ligase CBL-like isoform X1 [KO:K04707] [EC:2.3.2.27]
125261588  cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
125280855  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
125277476  prkn; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
125254701  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
125265141  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
125255879  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
125250510  cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
125267272  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
125253483  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
125259069  E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
125260454  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
125264784  pias1a; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
125254084  pias1b; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
125267026  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
125263786  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
125251035  pias4b; E3 SUMO-protein ligase PIAS4b isoform X1 [KO:K16065] [EC:2.3.2.27]
125259151  syvn1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
125243558  E3 ubiquitin-protein ligase NHLRC1-like [KO:K10602] [EC:2.3.2.27]
125250972  aire; autoimmune regulator [KO:K10603]
125255908  mgrn1a; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
125268845  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
125276939  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
125270866  mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
125267650  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
125262210  trim37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
125273687  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
125258299  cul1b; cullin-1b [KO:K03347]
125250170  cul1a; cullin-1a isoform X1 [KO:K03347]
125253090  skp1; S-phase kinase-associated protein 1 [KO:K03094]
125259455  fbxw11b; F-box and WD repeat domain-containing 11-B isoform X1 [KO:K03362]
125275627  fbxw11a; F-box and WD repeat domain-containing 11-A isoform X1 [KO:K03362]
125253496  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
125272683  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
125256968  fbxo2; F-box only protein 2 isoform X1 [KO:K10099]
125279660  fbxo4; F-box only protein 4 [KO:K10291]
125257544  cul2; cullin-2 isoform X1 [KO:K03870]
125250966  elocb; elongin C paralog b [KO:K03872]
125257535  eloca; elongin C paralog a isoform X1 [KO:K03872]
125276667  elob; elongin-B [KO:K03873]
125245314  vhll; von Hippel-Lindau-like protein [KO:K03871]
125273776  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
125248167  cul3b; cullin-3b [KO:K03869]
125250051  cul3a; LOW QUALITY PROTEIN: cullin-3a [KO:K03869]
125274051  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
125250058  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
125270538  si:rp71-68n21.9; kelch-like protein 9 isoform X1 [KO:K10447]
125266367  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
125262354  rhobtb2b; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
125280375  rho-related BTB domain-containing protein 2-like isoform X1 [KO:K07868]
125267417  rhobtb4; rho related BTB domain containing 4 [KO:K07868]
125255554  rhobtb1; rho-related BTB domain-containing protein 1 [KO:K07868]
125258961  cul4b; cullin-4B isoform X1 [KO:K10609]
125273018  cul4a; cullin-4A [KO:K10609]
125253949  ddb1; DNA damage-binding protein 1 isoform X1 [KO:K10610]
125253987  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
125279425  ercc8; LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8 [KO:K10570]
125247213  det1; DET1 homolog isoform X1 [KO:K10571]
125254164  rnf7; RING-box protein 2 [KO:K10611]
125253474  cul5b; cullin-5 isoform X1 [KO:K10612]
125248775  cul5a; cullin-5a [KO:K10612]
125272715  socs1b; suppressor of cytokine signaling 1b [KO:K04694]
125275571  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
125263117  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
125255451  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
125267312  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
125272937  anapc11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
125268015  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
125251665  cdc20; cell division cycle protein 20 homolog [KO:K03363]
125280018  fzr1a; fizzy/cell division cycle 20 related 1a [KO:K03364]
125250092  fizzy-related protein homolog isoform X1 [KO:K03364]
125251774  fzr1b; fizzy-related protein homolog [KO:K03364]
125276431  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
125272511  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
125278024  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
125280083  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
125268418  anaphase-promoting complex subunit 5-like [KO:K03352]
125270163  cdc16; cell division cycle protein 16 homolog [KO:K03353]
125280729  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
125252273  LOW QUALITY PROTEIN: cell division cycle protein 23 homolog [KO:K03355]
125253210  cell division cycle protein 23 homolog [KO:K03355]
125260765  LOW QUALITY PROTEIN: anaphase-promoting complex subunit 10-like [KO:K03357]
125267926  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
125252774  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
125248112  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
125255278  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mamb03050  Proteasome
KO pathway
ko04120   
LinkDB

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