KEGG   PATHWAY: mrv04622
Entry
mrv04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Mauremys reevesii (Reeves's turtle)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
mrv04622  RIG-I-like receptor signaling pathway
mrv04622

Organism
Mauremys reevesii (Reeves's turtle) [GN:mrv]
Gene
120407650  DDX58; antiviral innate immune response receptor RIG-I isoform X1 [KO:K12646] [EC:5.6.2.6]
120374928  IFIH1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
120397348  NFX1-type zinc finger-containing protein 1-like [KO:K27391]
120380313  ZNFX1; NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]
120407059  MAVS; mitochondrial antiviral-signaling protein [KO:K12648]
120392297  DHX58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
120404354  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
120374850  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
120399136  AZI2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
120392298  TBKBP1; TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
120388769  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
120383914  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
120403394  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
120388286  IRF3; interferon regulatory factor 3 [KO:K05411]
120404379  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
120407278  interferon beta-2-like [KO:K05414]
120407284  interferon beta-like [KO:K05414]
120407285  interferon beta-like [KO:K05414]
120407286  interferon beta-like [KO:K05414]
120407287  interferon epsilon-like [KO:K05414]
120407288  interferon beta-like [KO:K05414]
120407289  interferon beta-like [KO:K05414]
120407291  interferon beta-like [KO:K05414]
120407292  interferon beta-like [KO:K05414]
120407293  interferon epsilon-like [KO:K05414]
120407294  interferon beta-like [KO:K05414]
120407295  interferon beta-like [KO:K05414]
120407296  interferon kappa-like [KO:K05414]
120407297  interferon epsilon-like [KO:K05414]
120407300  interferon beta-like [KO:K05414]
120407302  interferon beta-like [KO:K05414]
120407541  interferon beta-like [KO:K05414]
120407717  interferon beta-like [KO:K05414]
120408182  interferon epsilon-like [KO:K05414]
120384429  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
120402879  FADD; FAS-associated death domain protein [KO:K02373]
120396472  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
120374759  CASP8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
120374760  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
120375092  caspase-10-like [KO:K04400] [EC:3.4.22.63]
120368653  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
120397038  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
120388708  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
120405241  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
120405938  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
120369204  RELA; transcription factor p65 isoform X1 [KO:K04735]
120392446  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
120392485  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
120386646  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
120400505  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
120404545  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
120407790  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
120405833  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
120368657  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
120369865  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
120403531  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
120404342  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
120389525  MAPK11; mitogen-activated protein kinase 11 isoform X1 [KO:K04441] [EC:2.7.11.24]
120389611  MAPK12; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
120406411  interleukin-8-like [KO:K10030]
120406412  interleukin-8-like [KO:K10030]
120406413  interleukin-8-like [KO:K10030]
120406445  interleukin-8-like [KO:K10030]
120406446  interleukin-8-like [KO:K10030]
120406447  interleukin-8-like [KO:K10030]
120406448  interleukin-8-like [KO:K10030]
120406556  alveolar macrophage chemotactic factor-like [KO:K10030]
120392459  TNF; tumor necrosis factor isoform X1 [KO:K03156]
120372381  IL12A; interleukin-12 subunit alpha isoform X1 [KO:K05406]
120370753  IL12B; interleukin-12 subunit beta [KO:K05425]
120406987  C-X-C motif chemokine 10-like isoform X1 [KO:K12671]
120406988  C-X-C motif chemokine 10-like [KO:K12671]
120390168  ADAR; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
120383383  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
120383710  RNF135; E3 ubiquitin-protein ligase RNF135 isoform X1 [KO:K10652] [EC:2.3.2.27]
120384494  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
120395122  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
120379753  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
120398869  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
120397317  RNF125; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
120386146  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
120401982  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
120407680  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
120375832  NLRX1; NLR family member X1 [KO:K12653]
120369684  STING1; stimulator of interferon genes protein [KO:K12654]
120388187  OTUD5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]
120403892  SIKE1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
120387725  DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
120390970  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
120405166  TKFC; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
mrv04010  MAPK signaling pathway
mrv04120  Ubiquitin mediated proteolysis
mrv04210  Apoptosis
KO pathway
ko04622   
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