KEGG   PATHWAY: padl04217
Entry
padl04217                   Pathway                                
Name
Necroptosis - Pygoscelis adeliae (Adelie penguin)
Description
Necroptosis is a programmed form of necrosis. It can be initiated by different stimuli, such as tumor necrosis factor (TNF), TNF-related apoptosis-inducing ligand (TRAIL), Fas ligand (FasL), interferon (IFN), LPS, viral DNA or RNA, DNA-damage agent and requires the kinase activity of receptor-interacting protein 1 (RIPK1) and RIPK3. Its execution involves ROS generation, calcium overload, the opening of the mitochondrial permeability transition pore, mitochondrial fission, inflammatory response and chromatinolysis. Necroptosis participates in many pathogenesis of diseases, including neurological diseases, retinal disorders, acute kidney injury, inflammatory diseases and microbial infections.
Class
Cellular Processes; Cell growth and death
Pathway map
padl04217  Necroptosis
padl04217

Organism
Pygoscelis adeliae (Adelie penguin) [GN:padl]
Gene
103922177  tumor necrosis factor receptor superfamily member 1A-like [KO:K03158]
103914203  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
103921138  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
103922096  TRAF5; TNF receptor-associated factor 5 [KO:K09849]
103919013  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
103918923  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
103922595  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
103913760  uncharacterized protein LOC103913760 [KO:K17595]
103919265  SPATA2; LOW QUALITY PROTEIN: spermatogenesis-associated protein 2 [KO:K17595]
103914175  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
103925969  ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]
103925771  FADD; FAS-associated death domain protein [KO:K02373]
103924262  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
103923440  caspase-8-like [KO:K04398] [EC:3.4.22.61]
103923407  CFLAR; CASP8 and FADD-like apoptosis regulator isoform X1 [KO:K04724]
103912607  cytochrome b-245 heavy chain [KO:K21421] [EC:1.-.-.-]
103915611  CAMK2G; calcium/calmodulin-dependent protein kinase type II subunit gamma [KO:K04515] [EC:2.7.11.17]
103915821  CAMK2A; calcium/calmodulin-dependent protein kinase type II subunit alpha [KO:K04515] [EC:2.7.11.17]
103926125  CAMK2D; calcium/calmodulin-dependent protein kinase type II subunit delta [KO:K04515] [EC:2.7.11.17]
103926144  SLC25A31; LOW QUALITY PROTEIN: ADP/ATP translocase 4 [KO:K05863]
103922565  SLC25A4; ADP/ATP translocase 1 [KO:K05863]
103923034  SLC25A5; LOW QUALITY PROTEIN: ADP/ATP translocase 2 [KO:K05863]
103923051  SLC25A6; ADP/ATP translocase 3 [KO:K05863]
103917964  PPID; peptidyl-prolyl cis-trans isomerase D [KO:K05864] [EC:5.2.1.8]
103915790  VDAC1; voltage-dependent anion-selective channel protein 1 [KO:K05862]
103915597  VDAC2; voltage-dependent anion-selective channel protein 2 [KO:K15040]
103920541  VDAC3; voltage-dependent anion-selective channel protein 3 [KO:K15041]
103923961  glutamate dehydrogenase 1, mitochondrial-like [KO:K00261] [EC:1.4.1.3]
103925862  GLUD1; glutamate dehydrogenase 1, mitochondrial [KO:K00261] [EC:1.4.1.3]
103914023  GLUL; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
103918931  LOW QUALITY PROTEIN: glutamine synthetase-like [KO:K01915] [EC:6.3.1.2]
103923108  PYGB; glycogen phosphorylase, brain form [KO:K00688] [EC:2.4.1.1]
103916016  PYGL; LOW QUALITY PROTEIN: glycogen phosphorylase, liver form [KO:K00688] [EC:2.4.1.1]
103915758  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
103913739  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
103918603  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
103925789  FTH1; ferritin heavy chain [KO:K00522] [EC:1.16.3.1]
103912844  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
103912845  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
103912846  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
103912848  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
103912850  cytosolic phospholipase A2 beta-like [KO:K16342] [EC:3.1.1.4]
103912806  PLA2G4F; LOW QUALITY PROTEIN: cytosolic phospholipase A2 zeta [KO:K16342] [EC:3.1.1.4]
103912808  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
103912809  cytosolic phospholipase A2 epsilon-like [KO:K16342] [EC:3.1.1.4]
103922181  PLA2G4A; cytosolic phospholipase A2 [KO:K16342] [EC:3.1.1.4]
103917382  PLA2G4C; LOW QUALITY PROTEIN: cytosolic phospholipase A2 gamma [KO:K16342] [EC:3.1.1.4]
103922858  CAPN11; LOW QUALITY PROTEIN: calpain-11 [KO:K01367] [EC:3.4.22.52]
103925056  CAPN2; calpain-2 catalytic subunit [KO:K03853] [EC:3.4.22.53]
103918117  MLKL; mixed lineage kinase domain-like protein [KO:K08849] [EC:2.7.11.1]
103912430  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial [KO:K15637] [EC:3.1.3.16]
103924507  DNM1L; dynamin-1-like protein [KO:K17065] [EC:3.6.5.5]
103925463  NLRP6; LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 6 [KO:K12800]
103916608  caspase-1-like [KO:K01370] [EC:3.4.22.36]
103912923  interleukin-1 beta-like [KO:K04519]
103916891  CHMP2B; charged multivesicular body protein 2b [KO:K12192]
103923510  LOW QUALITY PROTEIN: charged multivesicular body protein 3 [KO:K12193]
103912422  CHMP4B; charged multivesicular body protein 4b [KO:K12194]
103926217  CHMP4C; charged multivesicular body protein 4c [KO:K24782]
103917438  CHMP6; charged multivesicular body protein 6 [KO:K12195]
103919234  VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196]
103919194  CHMP1B; charged multivesicular body protein 1b [KO:K12197]
103922330  CHMP5; charged multivesicular body protein 5 [KO:K12198]
103913099  CHMP7; charged multivesicular body protein 7 [KO:K15053]
103922740  TRPM7; transient receptor potential cation channel subfamily M member 7 [KO:K04982] [EC:2.7.11.1]
103920085  HMGB1; high mobility group protein B1 isoform X1 [KO:K10802]
103924981  TNFSF10; tumor necrosis factor ligand superfamily member 10 [KO:K04721]
103914004  FASLG; tumor necrosis factor ligand superfamily member 6 [KO:K04389]
103913942  FAS; tumor necrosis factor receptor superfamily member 6 [KO:K04390]
103921082  interferon beta-like [KO:K05414]
103920369  interferon epsilon-like [KO:K05414]
103919962  IFNG; interferon gamma [KO:K04687]
103920316  IFNAR1; interferon alpha/beta receptor 1 [KO:K05130]
103920254  IFNAR2; interferon alpha/beta receptor 2 [KO:K05131]
103912749  IFNGR1; LOW QUALITY PROTEIN: interferon gamma receptor 1 [KO:K05132]
103920255  IFNGR2; interferon gamma receptor 2 [KO:K05133]
103913972  JAK1; LOW QUALITY PROTEIN: tyrosine-protein kinase JAK1 [KO:K11217] [EC:2.7.10.2]
103924940  JAK2; tyrosine-protein kinase JAK2 [KO:K04447] [EC:2.7.10.2]
103925472  STAT1; signal transducer and activator of transcription 1-alpha/beta isoform X1 [KO:K11220]
103920524  STAT3; signal transducer and activator of transcription 3 isoform X1 [KO:K04692]
103925471  STAT4; signal transducer and activator of transcription 4 [KO:K11222]
103925445  STAT6; signal transducer and activator of transcription 6 [KO:K11225]
103922839  EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase [KO:K16195] [EC:2.7.11.1]
103912903  TLR4; LOW QUALITY PROTEIN: toll-like receptor 4 [KO:K10160]
103914476  TICAM2; LOW QUALITY PROTEIN: TIR domain-containing adapter molecule 2 [KO:K05409]
103912181  TICAM1; TIR domain-containing adapter molecule 1 [KO:K05842]
103922518  TLR3; toll-like receptor 3 [KO:K05401]
103915750  SQSTM1; sequestosome-1 isoform X1 [KO:K14381]
103920298  HSP90AA1; heat shock protein HSP 90-alpha [KO:K04079]
103922900  HSP90AB1; heat shock protein HSP 90-beta [KO:K04079]
103912709  TNFAIP3; tumor necrosis factor alpha-induced protein 3 [KO:K11859] [EC:3.4.19.12]
103925012  PARP1; poly [ADP-ribose] polymerase 1 [KO:K24070] [EC:2.4.2.30]
103924359  BID; BH3-interacting domain death agonist [KO:K04726]
103925908  AIFM1; apoptosis-inducing factor 1, mitochondrial [KO:K04727] [EC:1.-.-.-]
103915432  LOW QUALITY PROTEIN: histone H2A-IV-like [KO:K11251]
103915452  LOW QUALITY PROTEIN: histone H2A-IV-like [KO:K11251]
103915509  histone H2A.J [KO:K11251]
103915778  core histone macro-H2A.1 isoform X1 [KO:K11251]
103919555  histone H2A.Z [KO:K11251]
103918475  core histone macro-H2A.2 [KO:K11251]
103916788  histone H2A-beta, sperm-like [KO:K11251]
103916019  histone H2A-like [KO:K11251]
103918864  histone H2A-beta, sperm-like [KO:K11251]
103925461  histone H2A-beta, sperm-like [KO:K11251]
103912924  PPIA; peptidyl-prolyl cis-trans isomerase A [KO:K03767] [EC:5.2.1.8]
103919231  BCL2; apoptosis regulator Bcl-2 [KO:K02161]
Compound
C00002  ATP
C00027  Hydrogen peroxide
C00076  Calcium cation
C00195  N-Acylsphingosine
C00219  Arachidonate
C00305  Magnesium cation
C00319  Sphingosine
C00550  Sphingomyelin
C14592  N-Methyl-N'-nitro-N-nitrosoguanidine
C16844  Hydroxyl radical
Reference
  Authors
Vandenabeele P, Galluzzi L, Vanden Berghe T, Kroemer G
  Title
Molecular mechanisms of necroptosis: an ordered cellular explosion.
  Journal
Nat Rev Mol Cell Biol 11:700-14 (2010)
DOI:10.1038/nrm2970
Reference
  Authors
Brenner D, Blaser H, Mak TW
  Title
Regulation of tumour necrosis factor signalling: live or let die.
  Journal
Nat Rev Immunol 15:362-74 (2015)
DOI:10.1038/nri3834
Reference
  Authors
Conrad M, Angeli JP, Vandenabeele P, Stockwell BR
  Title
Regulated necrosis: disease relevance and therapeutic opportunities.
  Journal
Nat Rev Drug Discov 15:348-66 (2016)
DOI:10.1038/nrd.2015.6
Reference
  Authors
Ofengeim D, Yuan J
  Title
Regulation of RIP1 kinase signalling at the crossroads of inflammation and cell death.
  Journal
Nat Rev Mol Cell Biol 14:727-36 (2013)
DOI:10.1038/nrm3683
Reference
  Authors
Murphy JM, Vince JE
  Title
Post-translational control of RIPK3 and MLKL mediated necroptotic cell death.
  Journal
F1000Res 4:F1000 Faculty Rev-1297 (2015)
DOI:10.12688/f1000research.7046.1
Reference
  Authors
Vanden Berghe T, Linkermann A, Jouan-Lanhouet S, Walczak H, Vandenabeele P
  Title
Regulated necrosis: the expanding network of non-apoptotic cell death pathways.
  Journal
Nat Rev Mol Cell Biol 15:135-47 (2014)
DOI:10.1038/nrm3737
Reference
  Authors
Dondelinger Y, Hulpiau P, Saeys Y, Bertrand MJ, Vandenabeele P
  Title
An evolutionary perspective on the necroptotic pathway.
  Journal
Trends Cell Biol 26:721-32 (2016)
DOI:10.1016/j.tcb.2016.06.004
Reference
  Authors
Thapa RJ, Ingram JP, Ragan KB, Nogusa S, Boyd DF, Benitez AA, Sridharan H, Kosoff R, Shubina M, Landsteiner VJ, Andrake M, Vogel P, Sigal LJ, tenOever BR, Thomas PG, Upton JW, Balachandran S
  Title
DAI Senses Influenza A Virus Genomic RNA and Activates RIPK3-Dependent Cell Death.
  Journal
Cell Host Microbe 20:674-681 (2016)
DOI:10.1016/j.chom.2016.09.014
Reference
  Authors
Yuan J, Najafov A, Py BF
  Title
Roles of Caspases in Necrotic Cell Death.
  Journal
Cell 167:1693-1704 (2016)
DOI:10.1016/j.cell.2016.11.047
Reference
  Authors
Jorgensen I, Rayamajhi M, Miao EA
  Title
Programmed cell death as a defence against infection.
  Journal
Nat Rev Immunol 17:151-164 (2017)
DOI:10.1038/nri.2016.147
Reference
  Authors
Vandenabeele P, Declercq W, Van Herreweghe F, Vanden Berghe T
  Title
The role of the kinases RIP1 and RIP3 in TNF-induced necrosis.
  Journal
Sci Signal 3:re4 (2010)
DOI:10.1126/scisignal.3115re4
Reference
  Authors
Vanlangenakker N, Vanden Berghe T, Vandenabeele P
  Title
Many stimuli pull the necrotic trigger, an overview.
  Journal
Cell Death Differ 19:75-86 (2012)
DOI:10.1038/cdd.2011.164
Reference
  Authors
Moriwaki K, Chan FK
  Title
RIP3: a molecular switch for necrosis and inflammation.
  Journal
Genes Dev 27:1640-9 (2013)
DOI:10.1101/gad.223321.113
Reference
  Authors
Humphries F, Yang S, Wang B, Moynagh PN
  Title
RIP kinases: key decision makers in cell death and innate immunity.
  Journal
Cell Death Differ 22:225-36 (2015)
DOI:10.1038/cdd.2014.126
Reference
  Authors
Wegner KW, Saleh D, Degterev A
  Title
Complex Pathologic Roles of RIPK1 and RIPK3: Moving Beyond Necroptosis.
  Journal
Trends Pharmacol Sci 38:202-225 (2017)
DOI:10.1016/j.tips.2016.12.005
Reference
  Authors
Kupka S, De Miguel D, Draber P, Martino L, Surinova S, Rittinger K, Walczak H
  Title
SPATA2-Mediated Binding of CYLD to HOIP Enables CYLD Recruitment to Signaling Complexes.
  Journal
Cell Rep 16:2271-80 (2016)
DOI:10.1016/j.celrep.2016.07.086
Reference
  Authors
Goodall ML, Fitzwalter BE, Zahedi S, Wu M, Rodriguez D, Mulcahy-Levy JM, Green DR, Morgan M, Cramer SD, Thorburn A
  Title
The Autophagy Machinery Controls Cell Death Switching between Apoptosis and Necroptosis.
  Journal
Dev Cell 37:337-49 (2016)
DOI:10.1016/j.devcel.2016.04.018
Reference
  Authors
Xu G, Tan X, Wang H, Sun W, Shi Y, Burlingame S, Gu X, Cao G, Zhang T, Qin J, Yang J
  Title
Ubiquitin-specific peptidase 21 inhibits tumor necrosis factor alpha-induced nuclear factor kappaB activation via binding to and deubiquitinating receptor-interacting protein 1.
  Journal
J Biol Chem 285:969-78 (2010)
DOI:10.1074/jbc.M109.042689
Reference
  Authors
Jacobsen AV, Silke J
  Title
The importance of being chaperoned: HSP90 and necroptosis.
  Journal
Cell Chem Biol 23:205-7 (2016)
DOI:10.1016/j.chembiol.2016.02.003
Reference
  Authors
Gurung P, Man SM, Kanneganti TD
  Title
A20 is a regulator of necroptosis.
  Journal
Nat Immunol 16:596-7 (2015)
DOI:10.1038/ni.3174
Reference
  Authors
Feng N, Anderson ME
  Title
CaMKII is a nodal signal for multiple programmed cell death pathways in heart.
  Journal
J Mol Cell Cardiol 103:102-109 (2017)
DOI:10.1016/j.yjmcc.2016.12.007
Reference
  Authors
Zhivotovsky B, Galluzzi L, Kepp O, Kroemer G
  Title
Adenine nucleotide translocase: a component of the phylogenetically conserved cell death machinery.
  Journal
Cell Death Differ 16:1419-25 (2009)
DOI:10.1038/cdd.2009.118
Reference
  Authors
Thapa RJ, Nogusa S, Chen P, Maki JL, Lerro A, Andrake M, Rall GF, Degterev A, Balachandran S
  Title
Interferon-induced RIP1/RIP3-mediated necrosis requires PKR and is licensed by FADD and caspases.
  Journal
Proc Natl Acad Sci U S A 110:E3109-18 (2013)
DOI:10.1073/pnas.1301218110
Reference
  Authors
Thapa RJ, Basagoudanavar SH, Nogusa S, Irrinki K, Mallilankaraman K, Slifker MJ, Beg AA, Madesh M, Balachandran S
  Title
NF-kappaB protects cells from gamma interferon-induced RIP1-dependent necroptosis.
  Journal
Mol Cell Biol 31:2934-46 (2011)
DOI:10.1128/MCB.05445-11
Reference
  Authors
Sridharan H, Upton JW
  Title
Programmed necrosis in microbial pathogenesis.
  Journal
Trends Microbiol 22:199-207 (2014)
DOI:10.1016/j.tim.2014.01.005
Reference
  Authors
Cabon L, Galan-Malo P, Bouharrour A, Delavallee L, Brunelle-Navas MN, Lorenzo HK, Gross A, Susin SA
  Title
BID regulates AIF-mediated caspase-independent necroptosis by promoting BAX activation.
  Journal
Cell Death Differ 19:245-56 (2012)
DOI:10.1038/cdd.2011.91
Reference
  Authors
Baritaud M, Boujrad H, Lorenzo HK, Krantic S, Susin SA
  Title
Histone H2AX: The missing link in AIF-mediated caspase-independent programmed necrosis.
  Journal
Cell Cycle 9:3166-73 (2010)
DOI:10.4161/cc.9.16.12887
Reference
  Authors
Upton JW, Kaiser WJ
  Title
DAI Another Way: Necroptotic Control of Viral Infection.
  Journal
Cell Host Microbe 21:290-293 (2017)
DOI:10.1016/j.chom.2017.01.016
Reference
  Authors
Silke J, Rickard JA, Gerlic M
  Title
The diverse role of RIP kinases in necroptosis and inflammation.
  Journal
Nat Immunol 16:689-97 (2015)
DOI:10.1038/ni.3206
Reference
  Authors
Guo H, Kaiser WJ
  Title
ESCRTing Necroptosis.
  Journal
Cell 169:186-187 (2017)
DOI:10.1016/j.cell.2017.03.030
Reference
  Authors
Gong YN, Guy C, Olauson H, Becker JU, Yang M, Fitzgerald P, Linkermann A, Green DR
  Title
ESCRT-III Acts Downstream of MLKL to Regulate Necroptotic Cell Death and Its Consequences.
  Journal
Cell 169:286-300.e16 (2017)
DOI:10.1016/j.cell.2017.03.020
Reference
  Authors
Petrie EJ, Hildebrand JM, Murphy JM
  Title
Insane in the membrane: a structural perspective of MLKL function in necroptosis.
  Journal
Immunol Cell Biol 95:152-159 (2017)
DOI:10.1038/icb.2016.125
Reference
  Authors
Cai Z, Jitkaew S, Zhao J, Chiang HC, Choksi S, Liu J, Ward Y, Wu LG, Liu ZG
  Title
Plasma membrane translocation of trimerized MLKL protein is required for TNF-induced necroptosis.
  Journal
Nat Cell Biol 16:55-65 (2014)
DOI:10.1038/ncb2883
Reference
  Authors
Lawlor KE, Khan N, Mildenhall A, Gerlic M, Croker BA, D'Cruz AA, Hall C, Kaur Spall S, Anderton H, Masters SL, Rashidi M, Wicks IP, Alexander WS, Mitsuuchi Y, Benetatos CA, Condon SM, Wong WW, Silke J, Vaux DL, Vince JE
  Title
RIPK3 promotes cell death and NLRP3 inflammasome activation in the absence of MLKL.
  Journal
Nat Commun 6:6282 (2015)
DOI:10.1038/ncomms7282
Reference
  Authors
Shlomovitz I, Zargrian S, Gerlic M
  Title
Mechanisms of RIPK3-induced inflammation.
  Journal
Immunol Cell Biol 95:166-172 (2017)
DOI:10.1038/icb.2016.124
Related
pathway
padl00250  Alanine, aspartate and glutamate metabolism
padl04210  Apoptosis
KO pathway
ko04217   
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