Entry
Name
Spliceosome - Tympanuchus pallidicinctus (lesser prairie-chicken)
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Tympanuchus pallidicinctus (lesser prairie-chicken) [GN:
tpai ]
Gene
128080897 SNRPB; small nuclear ribonucleoprotein-associated proteins B and B' [KO:K11086 ]
128076875 PRPF40A; pre-mRNA-processing factor 40 homolog A isoform X1 [KO:K12821 ]
128083810 TCERG1; LOW QUALITY PROTEIN: transcription elongation regulator 1 [KO:K12824 ]
128076503 U2AF1; splicing factor U2AF 35 kDa subunit isoform X1 [KO:K12836 ]
128071936 PUF60; poly(U)-binding-splicing factor PUF60 isoform X1 [KO:K12838 ]
128077521 SMNDC1; survival of motor neuron-related-splicing factor 30 [KO:K12839 ]
128088905 CHERP; calcium homeostasis endoplasmic reticulum protein isoform X1 [KO:K12841 ]
128082552 U2SURP; U2 snRNP-associated SURP motif-containing protein isoform X1 [KO:K12842 ]
128085404 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 [KO:K12624 ]
128090129 LSM7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 [KO:K12626 ]
128092053 PRPF3; U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1 [KO:K12843 ]
128090205 SNRNP27; U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [KO:K12846 ]
128088806 EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component [KO:K12852 ]
128088481 SNRNP40; U5 small nuclear ribonucleoprotein 40 kDa protein [KO:K12857 ]
128077188 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 [KO:K12741 ]
128075787 RBMX; RNA-binding motif protein, X chromosome isoform X1 [KO:K12885 ]
128089799 HNRNPK; heterogeneous nuclear ribonucleoprotein K isoform X1 [KO:K12886 ]
128090121 HNRNPM; heterogeneous nuclear ribonucleoprotein M isoform X1 [KO:K12887 ]
128086853 serine/arginine-rich splicing factor 5-like isoform X1 [KO:K12893 ]
128080907 SRSF6; serine/arginine-rich splicing factor 6 isoform X1 [KO:K12893 ]
128088244 SRSF4; serine/arginine-rich splicing factor 4 isoform X1 [KO:K12893 ]
128085793 SRSF5; serine/arginine-rich splicing factor 5 isoform X1 [KO:K12893 ]
128075654 serine/arginine-rich splicing factor 7-like isoform X1 [KO:K12896 ]
128078942 SRSF7; serine/arginine-rich splicing factor 7 isoform X1 [KO:K12896 ]
128085828 TRA2A; transformer-2 protein homolog alpha isoform X1 [KO:K12897 ]
128088305 SRSF10; serine/arginine-rich splicing factor 10 isoform X1 [KO:K12900 ]
Reference
Authors
Wahl MC, Will CL, Luhrmann R
Title
The spliceosome: design principles of a dynamic RNP machine.
Journal
Reference
Authors
Morris DP, Greenleaf AL
Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
Journal
Reference
Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
Journal
Reference
Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
Title
Spliceosome structure: piece by piece.
Journal
KO pathway
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