KEGG   PATHWAY: shon04120
Entry
shon04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Sturnira hondurensis
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
shon04120  Ubiquitin mediated proteolysis
shon04120

Other DBs
GO: 0016567
Organism
Sturnira hondurensis [GN:shon]
Gene
118974481  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
118975007  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
118975064  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
118975355  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
118975435  CUL3; cullin-3 isoform X1 [KO:K03869]
118975597  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
118975660  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
118975664  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
118975746  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
118976304  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
118977098  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
118978170  BRCA1; LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
118978220  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
118978333  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
118978370  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
118978853  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
118978904  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
118979021  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
118979056  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
118979473  CUL1; cullin-1 [KO:K03347]
118979811  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
118980129  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
118981268  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
118981368  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
118981725  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
118982133  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
118982272  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
118982345  [KO:K02977]
118982580  ELOC; elongin-C [KO:K03872]
118982591  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
118982722  CUL2; cullin-2 [KO:K03870]
118982785  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
118983135  [KO:K04552] [EC:2.3.2.23]
118983180  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
118983430  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
118983452  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
118983792  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
118984244  CUL4A; cullin-4A isoform X1 [KO:K10609]
118984256  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
118984272  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
118984373  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
118984480  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
118984503  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
118985104  ELOB; elongin-B [KO:K03873]
118985391  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
118985455  UBE2U; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
118985538  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
118985641  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
118985734  [KO:K03872]
118986097  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
118986348  FBXO2; F-box only protein 2 isoform X1 [KO:K10099]
118986368  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
118987052  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
118987769  PML; LOW QUALITY PROTEIN: protein PML [KO:K10054] [EC:2.3.2.-]
118988194  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
118988245  CUL5; cullin-5 [KO:K10612]
118988387  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
118988398  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
118988569  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
118989156  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
118989274  [KO:K06689] [EC:2.3.2.23]
118989366  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
118989385  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
118989465  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
118989849  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
118989867  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
118990079  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
118990085  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
118990187  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
118990366  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
118990459  [KO:K06688] [EC:2.3.2.23]
118990510  [KO:K06688] [EC:2.3.2.23]
118990752  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
118990923  UBOX5; RING finger protein 37 [KO:K10600]
118991007  [KO:K04551]
118991076  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
118991085  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
118991116  [KO:K02927]
118991143  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
118991205  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
118991704  CUL7; cullin-7 isoform X1 [KO:K10613]
118991714  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
118991875  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
118991984  DET1; DET1 homolog isoform X1 [KO:K10571]
118992059  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
118992066  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
118992244  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
118992291  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
118992350  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
118993281  CUL4B; cullin-4B isoform X1 [KO:K10609]
118993307  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
118993333  [KO:K03871]
118993334  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
118993456  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
118993715  [KO:K02977]
118994168  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
118994759  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
118994949  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
118995396  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
118995428  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
118995937  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
118995969  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
118996115  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
118996188  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
118996330  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
118996583  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
118996891  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
118996903  DDB1; DNA damage-binding protein 1 [KO:K10610]
118997510  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
118997553  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
118997804  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
118997965  [KO:K06689] [EC:2.3.2.23]
118997966  [KO:K06689] [EC:2.3.2.23]
118997967  [KO:K06689] [EC:2.3.2.23]
118997968  [KO:K06689] [EC:2.3.2.23]
118997969  [KO:K06689] [EC:2.3.2.23]
118997997  KLHL9; kelch-like protein 9 [KO:K10447]
118998218  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
118998293  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
118998481  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
118998503  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
118998516  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
118998624  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
118998670  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
118998776  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
118998814  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
118999006  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
118999496  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
118999630  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
118999677  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
118999720  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
118999935  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
119000125  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
119000256  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
119000319  AIRE; autoimmune regulator [KO:K10603]
119001147  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
119001285  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
119001606  [KO:K04725] [EC:2.3.2.27]
119001788  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
119001790  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
119001927  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
119002280  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
119002616  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
119002718  UBB; polyubiquitin-B isoform X1 [KO:K04551]
119002932  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
119002971  [KO:K02927]
119003013  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
119003060  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
119003069  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
119003403  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
119003439  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
119003579  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
119004066  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
119004069  [KO:K20217] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
shon03050  Proteasome
KO pathway
ko04120   

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