KEGG   PATHWAY: cery04622
Entry
cery04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Chanodichthys erythropterus (predatory carp)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
cery04622  RIG-I-like receptor signaling pathway
cery04622

Organism
Chanodichthys erythropterus (predatory carp) [GN:cery]
Gene
137003214  ripk1l; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
137003712  zmp:0000001127; interleukin-12 subunit alpha [KO:K05406]
137004468  il12a; interleukin-12 subunit alpha [KO:K05406]
137004534  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
137006187  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
137006239  traf3; TNF receptor-associated factor 3 [KO:K03174]
137007649  tbkbp1; TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
137007874  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
137008268  mapk8b; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
137008914  rigi; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
137009195  sike1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
137009531  ikbkg; NF-kappa-B essential modulator [KO:K07210]
137009757  [KO:K10652] [EC:2.3.2.27]
137009875  zgc:171775; STKc_p38 domain-containing protein [KO:K04441] [EC:2.7.11.24]
137010665  ifnphi1; interferon phi 1 isoform X1 [KO:K05414]
137010678  ifnphi3; interferon phi 3 [KO:K05414]
137010908  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
137011077  [KO:K04398] [EC:3.4.22.61]
137011090  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
137011206  casp8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
137011237  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
137011268  casp8l1; caspase 8, apoptosis-related cysteine peptidase, like 1 [KO:K04398] [EC:3.4.22.61]
137011583  trim25l; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
137011615  trim25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
137011765  ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 [KO:K11594] [EC:5.6.2.7]
137012088  mapk9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
137012171  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
137013992  il12ba; interleukin 12Ba [KO:K05425]
137014493  irf7; interferon regulatory factor 7 [KO:K09447]
137017711  sting1; stimulator of interferon genes protein [KO:K12654]
137018733  nfkbiaa; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a [KO:K04734]
137018920  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
137019958  mavs; mitochondrial antiviral-signaling protein [KO:K12648]
137020554  chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
137020639  mapk8a; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
137021070  otud5b; OTU domain-containing protein 5b isoform X1 [KO:K12655] [EC:3.4.19.12]
137021579  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
137021750  mapk14b; mitogen-activated protein kinase 14B isoform X1 [KO:K04441] [EC:2.7.11.24]
137022777  mapk12a; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
137023028  nfkb1; nuclear factor NF-kappa-B p105 subunit [KO:K02580]
137024126  tbk1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
137024246  atg5; autophagy protein 5 [KO:K08339]
137024298  mapk11; mitogen-activated protein kinase 11 isoform X1 [KO:K04441] [EC:2.7.11.24]
137024299  mapk12b; mitogen-activated protein kinase 12b isoform X1 [KO:K04441] [EC:2.7.11.24]
137025505  atg12; ubiquitin-like protein ATG12 [KO:K08336]
137026791  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
137026862  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
137026877  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
137027121  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
137028945  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
137029860  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X1 [KO:K03171]
137029882  cxcl8b.3; interleukin-8b.3 [KO:K10030]
137030077  fadd; protein FADD [KO:K02373]
137030508  rela; transcription factor p65 [KO:K04735]
137030555  cyld3; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
137030654  cxcl19; C-X-C motif chemokine 19 [KO:K10030]
137031082  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
137031225  traf6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
137031343  cyld; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
137031949  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
137032155  cxcl8a; interleukin-8 [KO:K10030]
137033632  traf2a; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
137033949  traf2b; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
137033976  [KO:K03173] [EC:2.3.2.27]
137034980  casp22; LOW QUALITY PROTEIN: caspase-22 [KO:K04398] [EC:3.4.22.61]
137035360  casp10; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
137035425  ifih1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
137035762  adar; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
137035823  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
137036157  ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 [KO:K11594] [EC:5.6.2.7]
137037220  tnfa; tumor necrosis factor a (TNF superfamily, member 2) [KO:K03156]
137037961  azi2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
cery04010  MAPK signaling pathway
cery04120  Ubiquitin mediated proteolysis
cery04210  Apoptosis
KO pathway
ko04622   

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