KEGG   PATHWAY: cjc04622
Entry
cjc04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Callithrix jacchus (white-tufted-ear marmoset)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
cjc04622  RIG-I-like receptor signaling pathway
cjc04622

Organism
Callithrix jacchus (white-tufted-ear marmoset) [GN:cjc]
Gene
100384985  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
100386104  RNF125; E3 ubiquitin-protein ligase RNF125 isoform X1 [KO:K12170] [EC:2.3.2.27]
100386367  ADAR; double-stranded RNA-specific adenosine deaminase isoform X3 [KO:K12968] [EC:3.5.4.37]
100387372  [KO:K05414]
100387401  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
100387686  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
100388391  IFNB1; interferon beta [KO:K05415]
100388493  RELA; transcription factor p65 isoform X1 [KO:K04735]
100388753  IFNW1; interferon omega-1 [KO:K05440]
100389500  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
100390109  MAPK10; mitogen-activated protein kinase 10 isoform X7 [KO:K04440] [EC:2.7.11.24]
100390201  [KO:K05414]
100390258  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
100390587  CXCL8; interleukin-8 [KO:K10030]
100392057  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
100392317  IFIH1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
100392518  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
100392721  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
100392730  IFNE; LOW QUALITY PROTEIN: interferon epsilon [KO:K05442]
100393096  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X2 [KO:K07209] [EC:2.7.11.10]
100394139  CASP10; caspase-10 [KO:K04400] [EC:3.4.22.63]
100394232  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
100395103  TANK; TRAF family member-associated NF-kappa-B activator isoform X4 [KO:K12650]
100395220  CASP8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
100395364  TRAF6; TNF receptor-associated factor 6 isoform X2 [KO:K03175] [EC:2.3.2.27]
100395403  IL12B; interleukin-12 subunit beta [KO:K05425]
100396359  ATG12; ubiquitin-like protein ATG12 isoform X1 [KO:K08336]
100396611  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
100396967  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
100397242  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 isoform X1 [KO:K09578] [EC:5.2.1.8]
100397484  TNF; tumor necrosis factor [KO:K03156]
100399305  TBKBP1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
100399667  DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
100399701  TBK1; serine/threonine-protein kinase TBK1 isoform X6 [KO:K05410] [EC:2.7.11.10]
100401347  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X3 [KO:K03171]
100402266  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
100402793  AZI2; 5-azacytidine-induced protein 2 [KO:K12651]
100403175  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
100403680  DHX58; ATP-dependent RNA helicase DHX58 isoform X1 [KO:K12649] [EC:5.6.2.6]
100403981  STING1; stimulator of interferon genes protein [KO:K12654]
100404226  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
100404377  MAPK14; mitogen-activated protein kinase 14 isoform X2 [KO:K04441] [EC:2.7.11.24]
100404382  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
100404940  IFNK; LOW QUALITY PROTEIN: interferon kappa [KO:K05441]
100405036  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
100405093  MAPK13; mitogen-activated protein kinase 13 isoform X1 [KO:K04441] [EC:2.7.11.24]
100406098  [KO:K05414]
100406466  [KO:K05414]
100406669  IL12A; interleukin-12 subunit alpha [KO:K05406]
100407645  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
100407954  NLRX1; NLR family member X1 isoform X2 [KO:K12653]
100408512  NFKBIB; NF-kappa-B inhibitor beta isoform X1 [KO:K02581]
100408692  RIGI; antiviral innate immune response receptor RIG-I [KO:K12646] [EC:5.6.2.6]
100410549  MAVS; mitochondrial antiviral-signaling protein isoform X1 [KO:K12648]
100410616  FADD; FAS-associated death domain protein [KO:K02373]
100414132  IRF3; interferon regulatory factor 3 isoform X4 [KO:K05411]
100414386  OTUD5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]
100414516  [KO:K05414]
100415031  TKFC; triokinase/FMN cyclase isoform X2 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
100415129  SIKE1; suppressor of IKBKE 1 isoform X2 [KO:K12656]
100415321  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
100415562  RIPK1; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
100894965  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
103792421  [KO:K12655] [EC:3.4.19.12]
103793369  [KO:K05414]
128928158  [KO:K05414]
128932203  [KO:K05414]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
cjc04010  MAPK signaling pathway
cjc04120  Ubiquitin mediated proteolysis
cjc04210  Apoptosis
cjc04630  JAK-STAT signaling pathway
KO pathway
ko04622   

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