Entry
Name
Lysosome - Crocodylus porosus (Australian saltwater crocodile)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Crocodylus porosus (Australian saltwater crocodile) [GN:
cpoo ]
Gene
109307392 ATP6V0B; V-type proton ATPase 21 kDa proteolipid subunit [KO:K03661 ]
109307915 SLC38A9; sodium-coupled neutral amino acid transporter 9 isoform X1 [KO:K14995 ]
109308936 VPS13C; vacuolar protein sorting-associated protein 13C isoform X1 [KO:K19525 ]
109309057 BLOC1S6; biogenesis of lysosome-related organelles complex 1 subunit 6 [KO:K20188 ]
109309322 MFSD8; major facilitator superfamily domain-containing protein 8 [KO:K12307 ]
109310559 VPS35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
109311178 MITF; microphthalmia-associated transcription factor isoform X1 [KO:K09455 ]
109311615 LAPTM4A; lysosomal-associated transmembrane protein 4A isoform X1 [KO:K12387 ]
109312137 OSTM1; osteopetrosis-associated transmembrane protein 1 [KO:K23863 ]
109312470 VPS26A; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
109312636 VPS33A; vacuolar protein sorting-associated protein 33A [KO:K20182 ]
109312646 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
109312697 ABCB9; ATP-binding cassette sub-family B member 9 isoform X1 [KO:K05656 ]
109312737 VPS41; vacuolar protein sorting-associated protein 41 homolog isoform X1 [KO:K20184 ]
109313390 TELO2; telomere length regulation protein TEL2 homolog isoform X1 [KO:K11137 ]
109313506 LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor [KO:K19363 ]
109313533 ATP6V0C; V-type proton ATPase 16 kDa proteolipid subunit [KO:K02155 ]
109313575 LAMP2; lysosome-associated membrane glycoprotein 2 isoform X1 [KO:K06528 ]
109313848 ATP6V1G1; V-type proton ATPase subunit G 1 isoform X1 [KO:K02152 ]
109313986 SLC2A6; solute carrier family 2, facilitated glucose transporter member 6 [KO:K08144 ]
109314901 RPTOR; regulatory-associated protein of mTOR isoform X1 [KO:K07204 ]
109315059 GGA3; ADP-ribosylation factor-binding protein GGA3 isoform X1 [KO:K12404 ]
109315406 BLOC1S5; biogenesis of lysosome-related organelles complex 1 subunit 5 [KO:K20187 ]
109316429 BLOC1S4; biogenesis of lysosome-related organelles complex 1 subunit 4 [KO:K08366 ]
109316540 ATP6V0A4; V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154 ]
109317440 ATP6V1B2; V-type proton ATPase subunit B, brain isoform [KO:K02147 ]
109317600 ARL8A; ADP-ribosylation factor-like protein 8A isoform X1 [KO:K07955 ]
109317930 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
109318054 OSBPL1A; oxysterol-binding protein-related protein 1 isoform X1 [KO:K20174 ]
109318105 VPS11; vacuolar protein sorting-associated protein 11 homolog [KO:K20179 ]
109318820 OSBPL2; oxysterol-binding protein-related protein 2 isoform X1 [KO:K20174 ]
109318884 OSBPL7; oxysterol-binding protein-related protein 7 isoform X1 [KO:K20463 ]
109319030 BLOC1S3; LOW QUALITY PROTEIN: biogenesis of lysosome-related organelles complex 1 subunit 3 [KO:K20186 ]
109320066 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
109320094 ATP6V0D2; V-type proton ATPase subunit d 2 isoform X1 [KO:K02146 ]
109320368 ATP6V0A1; V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154 ]
109320705 LAPTM4B; lysosomal-associated transmembrane protein 4B [KO:K12387 ]
109321081 ZFYVE26; zinc finger FYVE domain-containing protein 26 isoform X1 [KO:K19027 ]
109321156 ATP6V1C1; V-type proton ATPase subunit C 1 isoform X1 [KO:K02148 ]
109321331 OSBPL5; oxysterol-binding protein-related protein 5 isoform X1 [KO:K20464 ]
109321353 VPS18; vacuolar protein sorting-associated protein 18 homolog [KO:K20181 ]
109321558 DEPTOR; DEP domain-containing mTOR-interacting protein [KO:K20402 ]
109322504 SLC11A1; natural resistance-associated macrophage protein 1 [KO:K12347 ]
109323047 PLEKHM1; pleckstrin homology domain-containing family M member 1 [KO:K23282 ]
109323083 OSBPL6; oxysterol-binding protein-related protein 6 isoform X1 [KO:K20463 ]
109323405 VPS13A; vacuolar protein sorting-associated protein 13A isoform X1 [KO:K19525 ]
109323468 TMEM175; endosomal/lysomomal potassium channel TMEM175 [KO:K24915 ]
109324288 BLOC1S2; biogenesis of lysosome-related organelles complex 1 subunit 2 [KO:K16750 ]
Compound
Reference
Authors
Eskelinen EL, Tanaka Y, Saftig P
Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
Journal
Reference
Authors
Neufeld EF
Title
Lysosomal storage diseases.
Journal
Reference
Authors
von Figura K, Hasilik A
Title
Lysosomal enzymes and their receptors.
Journal
Reference
Authors
Janvier K, Bonifacino JS
Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
Journal
Reference
Authors
Vergarajauregui S, Puertollano R
Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
Journal
Reference
Authors
Jaskolka MC, Winkley SR, Kane PM
Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
Journal
Reference
Authors
Majdoul S, Compton AA
Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
Journal
Reference
Authors
Saftig P, Klumperman J
Title
Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function.
Journal
Reference
Authors
Savini M, Zhao Q, Wang MC
Title
Lysosomes: Signaling Hubs for Metabolic Sensing and Longevity.
Journal
Reference
Authors
Meyer-Schwesinger C
Title
Lysosome function in glomerular health and disease.
Journal
Reference
Authors
Allemailem KS, Almatroudi A, Alrumaihi F, Almatroodi SA, Alkurbi MO, Basfar GT, Rahmani AH, Khan AA
Title
Novel Approaches of Dysregulating Lysosome Functions in Cancer Cells by Specific Drugs and Its Nanoformulations: A Smart Approach of Modern Therapeutics.
Journal
Reference
Authors
Zhang W, Yang X, Li Y, Yu L, Zhang B, Zhang J, Cho WJ, Venkatarangan V, Chen L, Burugula BB, Bui S, Wang Y, Duan C, Kitzman JO, Li M
Title
GCAF(TMEM251) regulates lysosome biogenesis by activating the mannose-6-phosphate pathway.
Journal
Reference
Authors
Liu Q, Wang W, Xu L, Zhang Q, Wang H
Title
The host mannose-6-phosphate pathway and viral infection.
Journal
Reference
Authors
He Y, Fan Y, Ahmadpoor X, Wang Y, Li ZA, Zhu W, Lin H
Title
Targeting lysosomal quality control as a therapeutic strategy against aging and diseases.
Journal
Reference
Authors
Radulovic M, Yang C, Stenmark H
Title
Lysosomal membrane homeostasis and its importance in physiology and disease.
Journal
Reference
Authors
Watson ET, Wegeng WR, Aravani S, Ernst AM, von Blume J
Title
Mechanistic insights into cargo sorting and export from the Golgi apparatus.
Journal
Related pathway
cpoo04130 SNARE interactions in vesicular transport
cpoo04620 Toll-like receptor signaling pathway
KO pathway