KEGG   PATHWAY: dnm04622
Entry
dnm04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Dasypus novemcinctus (nine-banded armadillo)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
dnm04622  RIG-I-like receptor signaling pathway
dnm04622

Organism
Dasypus novemcinctus (nine-banded armadillo) [GN:dnm]
Gene
101411955  DDX58; LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
101415870  IFIH1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
101432393  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
101422140  basic proline-rich protein-like [KO:K12648]
101439110  DHX58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
101437632  TRAF3; TNF receptor-associated factor 3 [KO:K03174]
101429222  TANK; TRAF family member-associated NF-kappa-B activator [KO:K12650]
101415810  AZI2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
101419026  TBKBP1; TANK-binding kinase 1-binding protein 1 isoform X2 [KO:K12652]
101439489  IKBKG; NF-kappa-B essential modulator isoform X1 [KO:K07210]
101429820  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
101413159  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
101415954  IRF3; interferon regulatory factor 3 [KO:K05411]
101422123  IRF7; interferon regulatory factor 7 [KO:K09447]
101447879  interferon alpha-2-like [KO:K05414]
101432987  interferon alpha-3-like [KO:K05414]
101425111  interferon alpha-2-like [KO:K05414]
101418868  interferon alpha-2-like [KO:K05414]
101419317  interferon alpha-2-like [KO:K05414]
101419758  interferon alpha-2-like [KO:K05414]
101410923  IFNB1; interferon beta [KO:K05415]
101420625  interferon omega-1-like [KO:K05440]
101415731  interferon omega-1 [KO:K05440]
101431786  LOW QUALITY PROTEIN: interferon omega-2-like [KO:K05440]
101425560  interferon omega-1-like [KO:K05440]
101428265  interferon omega-1-like [KO:K05440]
101429155  interferon omega-1-like [KO:K05440]
101430032  interferon omega-1-like [KO:K05440]
105745915  IFNE; interferon epsilon isoform X1 [KO:K05442]
101414424  IFNK; interferon kappa [KO:K05441]
101428737  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
101415698  FADD; FAS-associated death domain protein [KO:K02373]
101427202  RIPK1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
101432853  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
101433860  CASP10; caspase-10 isoform X1 [KO:K04400] [EC:3.4.22.63]
101429772  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
101411204  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
101425701  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
101412730  NFKBIA; LOW QUALITY PROTEIN: NF-kappa-B inhibitor alpha [KO:K04734]
101437556  NFKB1; LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit [KO:K02580]
101417885  RELA; transcription factor p65 [KO:K04735]
101412100  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
101416090  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
101438500  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
101446968  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
101423710  MAPK9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
101416102  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
101421932  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
101425795  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
101426841  MAPK13; mitogen-activated protein kinase 13 isoform X2 [KO:K04441] [EC:2.7.11.24]
101415496  MAPK12; mitogen-activated protein kinase 12 isoform X2 [KO:K04441] [EC:2.7.11.24]
101416217  MAPK11; mitogen-activated protein kinase 11 isoform X1 [KO:K04441] [EC:2.7.11.24]
101441641  CXCL8; interleukin-8 precursor [KO:K10030]
101420445  TNF; tumor necrosis factor [KO:K03156]
101425226  IL12A; LOW QUALITY PROTEIN: interleukin-12 subunit alpha [KO:K05406]
101432053  IL12B; interleukin-12 subunit beta [KO:K05425]
101435416  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
101424153  ADAR; double-stranded RNA-specific adenosine deaminase isoform X4 [KO:K12968] [EC:3.5.4.37]
101436200  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
101443433  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
101423315  RNF125; E3 ubiquitin-protein ligase RNF125 isoform X1 [KO:K12170] [EC:2.3.2.27]
101444780  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
101444274  ATG5; autophagy protein 5 [KO:K08339]
101424980  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
101430343  NLRX1; NLR family member X1 [KO:K12653]
101434300  TMEM173; LOW QUALITY PROTEIN: stimulator of interferon genes protein [KO:K12654]
101418350  OTUD5; OTU domain-containing protein 5 [KO:K12655] [EC:3.4.19.12]
101444902  SIKE1; suppressor of IKBKE 1 [KO:K12656]
101437317  ATP-dependent RNA helicase DDX3X-like [KO:K11594] [EC:5.6.2.7]
101420949  DDX3X; ATP-dependent RNA helicase DDX3X [KO:K11594] [EC:5.6.2.7]
101414022  TKFC; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
dnm04010  MAPK signaling pathway
dnm04120  Ubiquitin mediated proteolysis
dnm04210  Apoptosis
dnm04630  JAK-STAT signaling pathway
KO pathway
ko04622   
LinkDB

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