KEGG   PATHWAY: mnp04120
Entry
mnp04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Mustela nigripes (black-footed ferret)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mnp04120  Ubiquitin mediated proteolysis
mnp04120

Other DBs
GO: 0016567
Organism
Mustela nigripes (black-footed ferret) [GN:mnp]
Gene
132003144  UBC; LOW QUALITY PROTEIN: polyubiquitin-C [KO:K08770]
132022160  ubiquitin-ribosomal protein eL40 fusion protein-like [KO:K02927]
132003531  ubiquitin-ribosomal protein eL40 fusion protein-like [KO:K02927]
132011192  UBA52; ubiquitin-ribosomal protein eL40 fusion protein [KO:K02927]
132027959  ubiquitin-like isoform X1 [KO:K02927]
132011492  ubiquitin-ribosomal protein eS31 fusion protein-like [KO:K02977]
132021546  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
132007554  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
132008039  LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
132005416  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
132005759  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
132011486  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
132011333  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
132006769  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
132007307  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
132028523  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
132022771  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
132017357  ubiquitin-conjugating enzyme E2 C-like [KO:K06688] [EC:2.3.2.23]
132013497  METTL21A; protein N-lysine methyltransferase METTL21A isoform X1 [KO:K06688] [EC:2.3.2.23]
132015194  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
132001794  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
132028571  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
132011756  ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
132011757  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
132013878  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
132014462  ubiquitin-conjugating enzyme E2 E3-like [KO:K20217] [EC:2.3.2.23]
132010127  NEDD8-conjugating enzyme UBE2F-like [KO:K10687] [EC:2.3.2.34]
132013689  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
132010170  ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
132003275  UBE2G1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
132012469  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
132015712  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
132027061  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
132018291  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
132000698  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
132005534  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
132015349  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
132023400  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
132020544  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
132021145  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
132005149  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
132022630  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
132008706  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
132023506  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
132019362  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
132020538  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
132014220  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
132004359  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
132025931  UBE2Q1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
132028196  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
131999134  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
132024660  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
132010670  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
132005189  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
132001854  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
132014089  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
132014962  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Z-like [KO:K10585] [EC:2.3.2.23]
132003613  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
132021266  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
131999124  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
132023263  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
132015519  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
132004393  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
132026504  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
132021852  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
132002985  LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
132014134  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
132005729  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
132013620  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
131999225  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
132023651  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
132007126  HUWE1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
132014215  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
131999509  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
131999129  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
132001342  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
132016306  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
132027451  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
132001057  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
132027079  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
132023398  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
132020575  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
132008152  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
132021775  RING finger protein 37 isoform X1 [KO:K10600]
132019435  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
132026971  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
132012251  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
132005263  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
132018447  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
132005947  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
132007439  E3 ubiquitin-protein ligase SIAH1A-like [KO:K04506] [EC:2.3.2.27]
131999180  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
132021320  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
132028649  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
132025490  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
132007125  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
131998633  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
131998650  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
132007612  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
132022105  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
131999555  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
132023603  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
132001408  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
132010797  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
132019097  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
132017132  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
132012455  AIRE; autoimmune regulator [KO:K10603]
132026941  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
132003500  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
132021534  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
132007827  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
132024472  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
132004293  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
132019190  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
132015602  CUL1; cullin-1 [KO:K03347]
132013173  S-phase kinase-associated protein 1-like [KO:K03094]
132013360  S-phase kinase-associated protein 1-like [KO:K03094]
132028518  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
132001173  LOW QUALITY PROTEIN: beta-TrCP-like [KO:K03362]
132016713  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
132028419  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
132028248  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
132000184  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
132001208  FBXO2; F-box only protein 2 [KO:K10099]
132028280  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
132020204  CUL2; cullin-2 [KO:K03870]
132014092  ELOC; elongin-C [KO:K03872]
132026996  ELOB; elongin-B [KO:K03873]
132011553  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
132013601  CUL3; cullin-3 [KO:K03869]
132010975  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
132024698  KLHL9; kelch-like protein 9 [KO:K10447]
132007021  KLHL13; kelch-like protein 13 [KO:K10447]
132016244  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
131999126  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
132007542  CUL4B; cullin-4B [KO:K10609]
132008017  cullin-4B-like [KO:K10609]
132002981  CUL4A; cullin-4A [KO:K10609]
132020361  DDB1; DNA damage-binding protein 1 [KO:K10610]
131999908  DNA damage-binding protein 1-like [KO:K10610]
132008234  DNA damage-binding protein 2 [KO:K10140]
132008429  DNA damage-binding protein 2 [KO:K10140]
132028664  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
131999060  DET1; DET1 homolog [KO:K10571]
132012178  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
132028765  CUL5; cullin-5 [KO:K10612]
132026900  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
132003545  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
132018041  CUL7; cullin-7 isoform X1 [KO:K10613]
132023200  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
132003148  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
132024206  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
132000719  CDC20; cell division cycle protein 20 homolog [KO:K03363]
132010775  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
132021348  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
132004390  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
132005138  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
132023134  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
132002627  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
132023142  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
132028549  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
131999936  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
132024500  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
132011809  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
132023911  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
132016438  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mnp03050  Proteasome
KO pathway
ko04120   
LinkDB

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