KEGG   PATHWAY: mpah04137
Entry
mpah04137                   Pathway                                
Name
Mitophagy - animal - Mus pahari (shrew mouse)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
mpah04137  Mitophagy - animal
mpah04137

Other DBs
GO: 0000422
Organism
Mus pahari (shrew mouse) [GN:mpah]
Gene
110312759  Pgam5; serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1 [KO:K15637] [EC:3.1.3.16]
110312797  Rabgef1; rab5 GDP/GTP exchange factor [KO:K20131]
110312873  Usp30; ubiquitin carboxyl-terminal hydrolase 30 [KO:K11851] [EC:3.4.19.12]
110312919  Fis1; mitochondrial fission 1 protein isoform X1 [KO:K17969]
110313440  Tfe3; transcription factor E3 isoform X1 [KO:K09105]
110313607  Fundc1; FUN14 domain-containing protein 1 isoform X1 [KO:K17986]
110313835  [KO:K04506] [EC:2.3.2.27]
110314055  Huwe1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
110315128  Rab7a; ras-related protein Rab-7a [KO:K07897]
110315796  Calcoco2; LOW QUALITY PROTEIN: calcium-binding and coiled-coil domain-containing protein 2 [KO:K21348]
110316031  Tax1bp1; tax1-binding protein 1 isoform X1 [KO:K21347]
110316095  Phb2; prohibitin-2 isoform X1 [KO:K17081]
110316221  Kras; GTPase KRas isoform X1 [KO:K07827]
110316298  Gabarapl1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
110316456  Bcl2l13; bcl-2-like protein 13 isoform X1 [KO:K15485]
110316879  Mitf; microphthalmia-associated transcription factor [KO:K09455]
110317027  Atg9b; autophagy-related protein 9B [KO:K17907]
110317041  Rela; transcription factor p65 [KO:K04735]
110317328  Tomm7; mitochondrial import receptor subunit TOM7 homolog [KO:K17771]
110317534  Ambra1; activating molecule in BECN1-regulated autophagy protein 1 isoform X1 [KO:K17985]
110317612  Csnk2a1; casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
110317793  Src; proto-oncogene tyrosine-protein kinase Src isoform X1 [KO:K05704] [EC:2.7.10.2]
110318162  Mtx2; metaxin-2 [KO:K17776]
110318296  Usp8; ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
110318389  [KO:K02977]
110318405  Traf2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
110318483  [KO:K02977]
110318578  E2f1; transcription factor E2F1 [KO:K17454]
110318630  Bcl2l1; bcl-2-like protein 1 [KO:K04570]
110318683  Map1lc3a; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435]
110318967  [KO:K02833]
110319567  Hras; GTPase HRas [KO:K02833]
110319885  Mfn1; mitofusin-1 [KO:K21356] [EC:3.6.5.-]
110320317  Mtx1; metaxin-1 isoform X1 [KO:K17776]
110320340  Nras; GTPase NRas [KO:K07828]
110320870  March5; E3 ubiquitin-protein ligase MARCH5 [KO:K10660] [EC:2.3.2.27]
110321239  Atg9a; autophagy-related protein 9A [KO:K17907]
110321732  Rras2; ras-related protein R-Ras2 [KO:K07830]
110322555  Rab7b; ras-related protein Rab-7b isoform X1 [KO:K07898]
110322560  Tomm40l; mitochondrial import receptor subunit TOM40B isoform X1 [KO:K11518]
110322831  [KO:K02927]
110322845  Mfn2; mitofusin-2 [KO:K06030] [EC:3.6.5.-]
110323093  Pink1; serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
110323225  [KO:K02927]
110323252  Jun; transcription factor AP-1 [KO:K04448]
110323465  Mul1; mitochondrial ubiquitin ligase activator of NFKB 1 [KO:K15688] [EC:2.3.2.27]
110323979  Hif1a; hypoxia-inducible factor 1-alpha isoform X1 [KO:K08268]
110324370  Tbc1d17; TBC1 domain family member 17 isoform X1 [KO:K19945]
110324429  Eif2s1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
110324607  Tomm20l; TOMM20-like protein 1 [KO:K17770]
110325440  Bnip3l; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like isoform X1 [KO:K15465]
110325466  Mapk8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
110326206  Tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
110326428  Foxo3; forkhead box protein O3 [KO:K09408]
110326563  Rab5b; ras-related protein Rab-5B [KO:K07888]
110327002  Usp15; ubiquitin carboxyl-terminal hydrolase 15 isoform X1 [KO:K21343] [EC:3.4.19.12]
110327126  Tbc1d15; TBC1 domain family member 15 isoform X1 [KO:K20168]
110327218  Arih1; E3 ubiquitin-protein ligase ARIH1 [KO:K11968] [EC:2.3.2.31]
110327401  Mras; ras-related protein M-Ras [KO:K07831]
110327699  Mon1a; vacuolar fusion protein MON1 homolog A [KO:K20195]
110327940  Nlrx1; NLR family member X1 [KO:K12653]
110328299  [KO:K02927]
110329140  Mtx3; metaxin-3 [KO:K17776]
110329363  Opa1; dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
110329400  Rras; ras-related protein R-Ras [KO:K07829]
110329587  Tomm70; mitochondrial import receptor subunit TOM70 [KO:K17768]
110330336  Bnip3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
110330449  Mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
110330576  Rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
110331121  Becn1; beclin-1 isoform X1 [KO:K08334]
110331264  Smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
110331353  Nbr1; next to BRCA1 gene 1 protein isoform X1 [KO:K17987]
110331416  Rab5c; ras-related protein Rab-5C isoform X1 [KO:K07889]
110331531  [KO:K02927]
110331598  Sqstm1; sequestosome-1 isoform X1 [KO:K14381]
110331608  Gabarap; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
110331651  [KO:K02927]
110331731  Tp53; cellular tumor antigen p53 isoform X1 [KO:K04451]
110331833  Rhot1; mitochondrial Rho GTPase 1 [KO:K07870] [EC:3.6.5.-]
110332652  Mapk9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
110333346  [KO:K02833]
110334081  Optn; optineurin [KO:K19946]
110334488  Sp1; transcription factor Sp1 isoform X1 [KO:K04684]
110334493  Samm50; sorting and assembly machinery component 50 homolog [KO:K07277]
110334651  Atf4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374]
110335376  Csnk2b; casein kinase II subunit beta isoform X1 [KO:K03115]
110335460  Tfeb; transcription factor EB isoform X1 [KO:K15590]
110336058  Rab5a; ras-related protein Rab-5A [KO:K07887]
110336434  Tomm40; mitochondrial import receptor subunit TOM40 homolog isoform X1 [KO:K11518]
110336550  Fkbp8; peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1 [KO:K09574] [EC:5.2.1.8]
110336738  Uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
110337286  Csnk2a2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
110337325  Mon1b; vacuolar fusion protein MON1 homolog B isoform X1 [KO:K20195]
110337329  Amfr; E3 ubiquitin-protein ligase AMFR isoform X1 [KO:K10636] [EC:2.3.2.36]
110337422  Gabarapl2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
110337437  Siah1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
110337490  Map1lc3b; microtubule-associated proteins 1A/1B light chain 3B isoform X1 [KO:K10435]
110337508  Tomm20; mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
110337969  [KO:K21356] [EC:3.6.5.-]
110338027  Cited2; cbp/p300-interacting transactivator 2 [KO:K21361]
110338080  Prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
110338424  Rhot2; mitochondrial Rho GTPase 2 [KO:K07871] [EC:3.6.5.-]
110338480  [KO:K02833]
110338774  Vcp; transitional endoplasmic reticulum ATPase [KO:K13525]
110339107  Ulk1; serine/threonine-protein kinase ULK1 isoform X1 [KO:K21357] [EC:2.7.11.1]
110339168  Ccz1; vacuolar fusion protein CCZ1 homolog [KO:K27045]
110339179  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
mpah04140  Autophagy - animal
mpah04210  Apoptosis
KO pathway
ko04137   

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