KEGG   PATHWAY: osa00630
Entry
osa00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Oryza sativa japonica (Japanese rice)
Class
Metabolism; Carbohydrate metabolism
Pathway map
osa00630  Glyoxylate and dicarboxylate metabolism
osa00630

Module
osa_M00012  Glyoxylate cycle [PATH:osa00630]
osa_M00621  Glycine cleavage system [PATH:osa00630]
Other DBs
GO: 0046487 0043648
Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
3131463  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
4324401  [KO:K15918] [EC:2.7.1.31]
4324773  [KO:K00600] [EC:2.1.2.1]
4325932  [KO:K00281] [EC:1.4.4.2]
4326136  [KO:K00626] [EC:2.3.1.9]
4326249  [KO:K00026] [EC:1.1.1.37]
4326312  [KO:K18121] [EC:1.1.1.79 1.1.1.-]
4326849  [KO:K00382] [EC:1.8.1.4]
4326894  [KO:K01455] [EC:3.5.1.49]
4326980  [KO:K00382] [EC:1.8.1.4]
4327423  [KO:K00026] [EC:1.1.1.37]
4327981  [KO:K15893] [EC:1.1.1.29]
4328073  CAT-A; catalase isozyme A [KO:K03781] [EC:1.11.1.6]
4328326  [KO:K01602] [EC:4.1.1.39]
4328441  [KO:K02437]
4328598  [KO:K01647] [EC:2.3.3.1]
4328812  [KO:K01647] [EC:2.3.3.1]
4329518  [KO:K01895] [EC:6.2.1.1]
4329690  [KO:K18121] [EC:1.1.1.79 1.1.1.-]
4330649  GLN1-1; glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
4331294  [KO:K01433] [EC:3.5.1.10]
4331509  [KO:K03781] [EC:1.11.1.6]
4331547  [KO:K01681] [EC:4.2.1.3]
4331779  [KO:K00827] [EC:2.6.1.44 2.6.1.40]
4332108  GLN1-2; glutamine synthetase cytosolic isozyme 1-2 [KO:K01915] [EC:6.3.1.2]
4332592  [KO:K01913] [EC:6.2.1.1 6.2.1.2]
4332593  [KO:K01913] [EC:6.2.1.1 6.2.1.2]
4332775  [KO:K00827] [EC:2.6.1.44 2.6.1.40]
4333896  GLN1-3; glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
4334048  [KO:K00600] [EC:2.1.2.1]
4334274  [KO:K00026] [EC:1.1.1.37]
4334349  GLO1; glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
4334913  [KO:K15919] [EC:1.1.1.79 1.1.1.81]
4334914  [KO:K15919] [EC:1.1.1.79 1.1.1.81]
4334915  [KO:K15919] [EC:1.1.1.79 1.1.1.81]
4334916  [KO:K15919] [EC:1.1.1.79 1.1.1.81]
4335745  [KO:K01895] [EC:6.2.1.1]
4336245  [KO:K19269] [EC:3.1.3.18 3.1.3.48]
4336595  [KO:K00025] [EC:1.1.1.37]
4337048  GLO3; glycolate oxidase 3 isoform 1 [KO:K11517] [EC:1.1.3.15]
4337051  [KO:K00605] [EC:2.1.2.10]
4337272  24K23.12; glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
4337447  [KO:K22133] [EC:6.2.1.8]
4337862  [KO:K00382] [EC:1.8.1.4]
4337881  [KO:K00382] [EC:1.8.1.4]
4338868  [KO:K00600] [EC:2.1.2.1]
4339095  [KO:K00827] [EC:2.6.1.44 2.6.1.40]
4339682  [KO:K00026] [EC:1.1.1.37]
4340833  [KO:K01681] [EC:4.2.1.3]
4341069  P0404G03.8; formate dehydrogenase 1, mitochondrial [KO:K00122] [EC:1.17.1.9]
4341070  OsJ_21395; formate dehydrogenase 2, mitochondrial [KO:K00122] [EC:1.17.1.9]
4341516  [KO:K00281] [EC:1.4.4.2]
4341790  [KO:K02437]
4342124  CAT-B; catalase isozyme B [KO:K03781] [EC:1.11.1.6]
4342210  [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
4342420  GLO5; glycolate oxidase 5 [KO:K11517] [EC:1.1.3.15]
4343441  ICL; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
4343908  GLO4; peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
4343993  [KO:K00026] [EC:1.1.1.37]
4344164  Fd-GOGAT; ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
4345657  [KO:K00026] [EC:1.1.1.37]
4345962  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
4346520  [KO:K00626] [EC:2.3.1.9]
4346547  [KO:K19269] [EC:3.1.3.18 3.1.3.48]
4348905  PP37; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
4349114  GDCSH; glycine cleavage system H protein, mitochondrial [KO:K02437]
4350456  [KO:K00600] [EC:2.1.2.1]
4350660  [KO:K01647] [EC:2.3.3.1]
4351966  OsJ_17688; ribulose bisphosphate carboxylase small subunit, chloroplastic 1 [KO:K01602] [EC:4.1.1.39]
4352014  RBCS1; ribulose bisphosphate carboxylase small subunit, chloroplastic 2 [KO:K01602] [EC:4.1.1.39]
4352016  [KO:K01602] [EC:4.1.1.39]
4352021  [KO:K01602] [EC:4.1.1.39]
4352058  [KO:K00600] [EC:2.1.2.1]
4352871  OsJ_36976; malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
9268154  MS; malate synthase [KO:K01638] [EC:2.3.3.9]
9270306  [KO:K01681] [EC:4.2.1.3]
9271010  [KO:K19269] [EC:3.1.3.18 3.1.3.48]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
osa00010  Glycolysis / Gluconeogenesis
osa00020  Citrate cycle (TCA cycle)
osa00030  Pentose phosphate pathway
osa00053  Ascorbate and aldarate metabolism
osa00071  Fatty acid degradation
osa00230  Purine metabolism
osa00250  Alanine, aspartate and glutamate metabolism
osa00260  Glycine, serine and threonine metabolism
osa00270  Cysteine and methionine metabolism
osa00620  Pyruvate metabolism
osa00710  Carbon fixation by Calvin cycle
osa00750  Vitamin B6 metabolism
osa00910  Nitrogen metabolism
KO pathway
ko00630   

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