KEGG   PATHWAY: osa00630
Entry
osa00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Oryza sativa japonica (Japanese rice) (RefSeq)
Class
Metabolism; Carbohydrate metabolism
Pathway map
osa00630  Glyoxylate and dicarboxylate metabolism
osa00630

Module
osa_M00012  Glyoxylate cycle [PATH:osa00630]
osa_M00532  Photorespiration [PATH:osa00630]
Other DBs
GO: 0046487 0043648
Organism
Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
Gene
4343441  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
4335745  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
4329518  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
4332592  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
4332593  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
9268154  malate synthase [KO:K01638] [EC:2.3.3.9]
4348905  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
4336595  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
4352871  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
4334274  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
4326249  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
4327423  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
4345657  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
4339682  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
4343993  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
4328812  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
4328598  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
4350660  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
4340833  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
4331547  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
9270306  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
4326136  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
4346520  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
4334349  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
4337048  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 isoform X1 [KO:K11517] [EC:1.1.3.15]
4342420  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 isoform X1 [KO:K11517] [EC:1.1.3.15]
4343908  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
9266366  LOW QUALITY PROTEIN: peroxisomal (S)-2-hydroxy-acid oxidase GLO2 [KO:K11517] [EC:1.1.3.15]
4328073  catalase isozyme A [KO:K03781] [EC:1.11.1.6]
4342124  catalase isozyme B [KO:K03781] [EC:1.11.1.6]
4331509  catalase-1 [KO:K03781] [EC:1.11.1.6]
4334916  glyoxylate/hydroxypyruvate reductase HPR3 isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
4334914  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
4334915  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
4334913  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
4326312  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
4329690  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
4327981  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
4346547  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
4336245  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
9271010  phosphoglycolate phosphatase 1B, chloroplastic isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
3131463  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
4352016  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
4328326  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
4351966  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
4352014  ribulose bisphosphate carboxylase small chain A, chloroplastic [KO:K01602] [EC:4.1.1.39]
4352021  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
4345962  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
4342210  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
4344164  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
4337272  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
4333896  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
4330649  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
4332108  glutamine synthetase cytosolic isozyme 1-2 [KO:K01915] [EC:6.3.1.2]
4338868  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
4324773  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
4350456  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
4334048  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
4352058  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
4325932  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
4341516  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
4337051  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
4326980  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
4337862  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
4326849  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
4337881  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
4341790  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
4349114  glycine cleavage system H protein, mitochondrial [KO:K02437]
4328441  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
9269154  uncharacterized protein LOC9269154 [KO:K02437]
4324401  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
4341070  formate dehydrogenase 2, mitochondrial [KO:K00122] [EC:1.17.1.9]
4341069  formate dehydrogenase 1, mitochondrial [KO:K00122] [EC:1.17.1.9]
4331294  formyltetrahydrofolate deformylase 2, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
4326894  uncharacterized protein LOC4326894 [KO:K01455] [EC:3.5.1.49]
4337447  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
osa00010  Glycolysis / Gluconeogenesis
osa00020  Citrate cycle (TCA cycle)
osa00053  Ascorbate and aldarate metabolism
osa00071  Fatty acid degradation
osa00230  Purine metabolism
osa00250  Alanine, aspartate and glutamate metabolism
osa00260  Glycine, serine and threonine metabolism
osa00620  Pyruvate metabolism
osa00710  Carbon fixation in photosynthetic organisms
osa00750  Vitamin B6 metabolism
osa00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system