KEGG   PATHWAY: cmy04622
Entry
cmy04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Chelonia mydas (green sea turtle)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
cmy04622  RIG-I-like receptor signaling pathway
cmy04622

Organism
Chelonia mydas (green sea turtle) [GN:cmy]
Gene
102936061  DDX58; antiviral innate immune response receptor RIG-I isoform X3 [KO:K12646] [EC:5.6.2.6]
102943181  IFIH1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
102933596  NFX1-type zinc finger-containing protein 1 [KO:K27391]
102944776  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
102936151  MAVS; mitochondrial antiviral-signaling protein isoform X2 [KO:K12648]
102940723  DHX58; probable ATP-dependent RNA helicase DHX58 isoform X2 [KO:K12649] [EC:5.6.2.6]
102941336  TRAF3; TNF receptor-associated factor 3 isoform X2 [KO:K03174]
102945095  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
102947927  AZI2; 5-azacytidine-induced protein 2 isoform X2 [KO:K12651]
102942678  TBKBP1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
102938812  IKBKG; NF-kappa-B essential modulator isoform X3 [KO:K07210]
102938424  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
102930512  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
114019695  IRF3; interferon regulatory factor 3 isoform X1 [KO:K05411]
102929901  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
102940750  interferon kappa [KO:K05414]
119566698  interferon tau-like [KO:K05414]
119566705  interferon beta-like [KO:K05414]
119566709  interferon epsilon-like [KO:K05414]
122466284  interferon kappa-like [KO:K05414]
119566683  interferon beta-like [KO:K05414]
119566690  interferon beta-like [KO:K05414]
119566686  interferon beta-like [KO:K05414]
119566689  interferon beta-like [KO:K05414]
119566691  interferon beta-like [KO:K05414]
119566694  interferon beta-like [KO:K05414]
119566702  interferon beta-like [KO:K05414]
119566706  interferon beta-like [KO:K05414]
102937742  LOW QUALITY PROTEIN: interferon beta [KO:K05414]
119566681  interferon beta-like [KO:K05414]
119566692  interferon beta-like [KO:K05414]
119566697  interferon beta-like [KO:K05414]
119566699  interferon beta-like [KO:K05414]
119566704  interferon beta-like [KO:K05414]
119566708  interferon beta-like [KO:K05414]
119566710  interferon beta-like [KO:K05414]
102939626  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
102930159  FADD; FAS-associated death domain protein [KO:K02373]
102944603  RIPK1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
102931356  caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
102934251  caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
102931579  caspase-10 [KO:K04400] [EC:3.4.22.63]
102932800  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
102932073  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
102932910  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
102937973  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
102944582  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X2 [KO:K02580]
102947354  RELA; transcription factor p65 isoform X1 [KO:K04735]
102941067  TRAF2; TNF receptor-associated factor 2 isoform X3 [KO:K03173] [EC:2.3.2.27]
102936052  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
102938959  TRAF6; TNF receptor-associated factor 6 isoform X2 [KO:K03175] [EC:2.3.2.27]
102938448  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
102935187  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
102934812  MAPK9; mitogen-activated protein kinase 9 isoform X4 [KO:K04440] [EC:2.7.11.24]
102932835  MAPK10; mitogen-activated protein kinase 10 isoform X4 [KO:K04440] [EC:2.7.11.24]
102938087  MAPK11; mitogen-activated protein kinase 11 isoform X6 [KO:K04441] [EC:2.7.11.24]
102940215  MAPK12; mitogen-activated protein kinase 12 isoform X1 [KO:K04441] [EC:2.7.11.24]
102941338  MAPK13; mitogen-activated protein kinase 13 isoform X1 [KO:K04441] [EC:2.7.11.24]
102934859  MAPK14; mitogen-activated protein kinase 14 isoform X3 [KO:K04441] [EC:2.7.11.24]
102933740  interleukin-8 isoform X1 [KO:K10030]
119563574  interleukin-8-like [KO:K10030]
114020184  interleukin-8 [KO:K10030]
102936332  TNF; tumor necrosis factor [KO:K03156]
102945506  IL12A; LOW QUALITY PROTEIN: interleukin-12 subunit alpha [KO:K05406]
102939116  IL12B; interleukin-12 subunit beta [KO:K05425]
119566069  C-X-C motif chemokine 10 [KO:K12671]
119566067  C-X-C motif chemokine 10-like [KO:K12671]
119566068  C-X-C motif chemokine 10 [KO:K12671]
102941128  ADAR; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
102947648  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
102940179  E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
102947087  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
102946483  ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
102948295  ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
102938903  RNF125; E3 ubiquitin-protein ligase RNF125 isoform X2 [KO:K12170] [EC:2.3.2.27]
102937006  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
102942544  ATG5; autophagy protein 5 isoform X4 [KO:K08339]
102945931  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
102947613  NLRX1; NLR family member X1 [KO:K12653]
102932364  STING1; stimulator of interferon genes protein [KO:K12654]
114021827  OTUD5; OTU domain-containing protein 5 [KO:K12655] [EC:3.4.19.12]
102933945  SIKE1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
102935993  DDX3X; ATP-dependent RNA helicase DDX3X isoform X4 [KO:K11594] [EC:5.6.2.7]
102945890  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 isoform X1 [KO:K09578] [EC:5.2.1.8]
102935253  TKFC; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
cmy04010  MAPK signaling pathway
cmy04120  Ubiquitin mediated proteolysis
cmy04210  Apoptosis
KO pathway
ko04622   
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