KEGG   PATHWAY: ctp03040
Entry
ctp03040                    Pathway                                
Name
Spliceosome - Candida tropicalis
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
ctp03040  Spliceosome
ctp03040

Other DBs
GO: 0005681
Organism
Candida tropicalis [GN:ctp]
Gene
CTRG_05692  hypothetical protein [KO:K12811] [EC:5.6.2.7]
CTRG_00129  ATP-dependent RNA helicase SUB2 [KO:K12812] [EC:5.6.2.7]
CTRG_02323  hypothetical protein [KO:K12814] [EC:5.6.2.6]
CTRG_00839  conserved hypothetical protein [KO:K12815] [EC:5.6.2.6]
CTRG_00840  hypothetical protein [KO:K12815] [EC:5.6.2.6]
CTRG_03560  conserved hypothetical protein [KO:K12816]
CTRG_01091  hypothetical protein [KO:K12817]
CTRG_06143  pre-mRNA splicing factor ATP-dependent RNA helicase PRP22 [KO:K12818] [EC:5.6.2.6]
CTRG_05687  conserved hypothetical protein [KO:K12819]
CTRG_02156  pre-mRNA splicing factor ATP-dependent RNA helicase PRP43 [KO:K12820] [EC:5.6.2.6]
CTRG_03150  hypothetical protein [KO:K11086]
CTRG_05794  conserved hypothetical protein [KO:K11087]
CTRG_01666  small nuclear ribonucleoprotein Sm D2 [KO:K11096]
CTRG_02683  small nuclear ribonucleoprotein Sm D3 [KO:K11088]
CTRG_02990  small nuclear ribonucleoprotein E [KO:K11097]
CTRG_01437  predicted protein [KO:K11099]
CTRG_01558  conserved hypothetical protein [KO:K11093]
CTRG_01791  hypothetical protein [KO:K11095]
CTRG_00981  conserved hypothetical protein [KO:K12821]
CTRG_00923  hypothetical protein [KO:K12823] [EC:5.6.2.7]
CTRG_03835  conserved hypothetical protein [KO:K11092]
CTRG_00025  hypothetical protein [KO:K12825]
CTRG_03218  hypothetical protein [KO:K12826]
CTRG_05288  hypothetical protein [KO:K12827]
CTRG_00426  hypothetical protein [KO:K12828]
CTRG_05822  predicted protein [KO:K12829]
CTRG_02218  hypothetical protein [KO:K12830]
CTRG_01752  hypothetical protein [KO:K12831]
CTRG_03476  conserved hypothetical protein [KO:K12832]
CTRG_02127  conserved hypothetical protein [KO:K12833]
CTRG_01896  pre-mRNA splicing factor ini1 [KO:K12834]
CTRG_04500  predicted protein [KO:K12836]
CTRG_04509  hypothetical protein [KO:K12836]
CTRG_01350  predicted protein [KO:K12837]
CTRG_00390  hypothetical protein [KO:K12621]
CTRG_03054  hypothetical protein [KO:K12622]
CTRG_05004  conserved hypothetical protein [KO:K12623]
CTRG_01056  hypothetical protein [KO:K12625]
CTRG_05547  conserved hypothetical protein [KO:K12627]
CTRG_01306  conserved hypothetical protein [KO:K12843]
CTRG_05904  predicted protein [KO:K12662]
CTRG_01798  conserved hypothetical protein [KO:K12844]
CTRG_02311  NHP2/L7aE family protein [KO:K12845]
CTRG_03720  conserved hypothetical protein [KO:K12847]
CTRG_05433  predicted protein [KO:K11984]
CTRG_01379  predicted protein [KO:K12848]
CTRG_04097  hypothetical protein [KO:K12851]
CTRG_01611  conserved hypothetical protein [KO:K12852]
CTRG_03547  hypothetical protein [KO:K12855]
CTRG_03042  pre-mRNA splicing factor PRP8 [KO:K12856]
CTRG_04113  conserved hypothetical protein [KO:K12858] [EC:5.6.2.7]
CTRG_05341  spliceosomal protein DIB1 [KO:K12859]
CTRG_05612  conserved hypothetical protein [KO:K10599] [EC:2.3.2.27]
CTRG_03423  hypothetical protein [KO:K12860]
CTRG_06194  hypothetical protein [KO:K12862]
CTRG_03551  predicted protein [KO:K12863]
CTRG_03109  heat shock protein SSB1 [KO:K03283]
CTRG_04728  heat shock protein 70 2 [KO:K03283]
CTRG_03648  heat shock protein SSA1 [KO:K03283]
CTRG_02803  conserved hypothetical protein [KO:K06063]
CTRG_03803  predicted protein [KO:K12867]
CTRG_04974  predicted protein [KO:K12868]
CTRG_00454  conserved hypothetical protein [KO:K12869]
CTRG_05149  conserved hypothetical protein [KO:K12870]
CTRG_02037  conserved hypothetical protein [KO:K12872]
CTRG_03372  cell cycle control protein cwf14 [KO:K12873]
CTRG_04810  eukaryotic initiation factor 4A-12 [KO:K13025] [EC:5.6.2.7]
CTRG_01632  conserved hypothetical protein [KO:K12879]
CTRG_05350  hypothetical protein [KO:K12880]
CTRG_03319  predicted protein [KO:K12881]
CTRG_02478  predicted protein [KO:K12881]
CTRG_03155  hypothetical protein [KO:K12882]
CTRG_04482  conserved hypothetical protein [KO:K12883]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
KO pathway
ko03040   
LinkDB

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