Entry
Name
Endocytosis - Esox lucius (northern pike)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Esox lucius (northern pike) [GN:
els ]
Gene
105006096 zinc finger FYVE domain-containing protein 16 isoform X3 [KO:K04679 ]
105031234 zfyve9; zinc finger FYVE domain-containing protein 9 isoform X1 [KO:K04679 ]
105028158 zinc finger FYVE domain-containing protein 9 isoform X1 [KO:K04679 ]
105005850 smad3; mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605 ]
105021977 sh3kbp1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
105011464 eps15l1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
105026373 eps15; epidermal growth factor receptor substrate 15 isoform X5 [KO:K12472 ]
105022526 epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
105015824 ldlrap1; low density lipoprotein receptor adapter protein 1 isoform X1 [KO:K12474 ]
105028631 low density lipoprotein receptor adapter protein 1 isoform X1 [KO:K12474 ]
105030235 low density lipoprotein receptor adapter protein 1-A-like isoform X1 [KO:K12474 ]
114839978 low density lipoprotein receptor adapter protein 1-A-like [KO:K12474 ]
105018628 neural Wiskott-Aldrich syndrome protein-like isoform X2 [KO:K23612 ]
105017188 arpc4; actin related protein 2/3 complex, subunit 4, 20kDa [KO:K05755 ]
105006807 arpc5l; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
105013271 WAS/WASL-interacting protein family member 2 isoform X1 [KO:K19475 ]
105011920 dnajc6; putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526 ]
105017119 capzb; F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
105014829 vps29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
105021335 vps26a; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
105024202 vacuolar protein sorting-associated protein 26B-like isoform X1 [KO:K18466 ]
105026352 vps35; vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468 ]
105029614 hgs; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X3 [KO:K12182 ]
105012594 vps28; vacuolar protein sorting-associated protein 28 homolog isoform X1 [KO:K12184 ]
105011081 vps37d; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
105021025 vps37a; vacuolar protein sorting-associated protein 37A isoform X1 [KO:K12185 ]
105022895 vps37c; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
105006199 vps37b; vacuolar protein sorting-associated protein 37B [KO:K12185 ]
105011209 vps36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
105021188 vps25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
105018959 vps4b; vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
105018559 vps4a; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
105017735 vta1; vacuolar protein sorting-associated protein VTA1 homolog isoform X1 [KO:K12199 ]
105012523 pdcd6ip; programmed cell death 6-interacting protein isoform X3 [KO:K12200 ]
105017707 igf2r; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
105009012 il2rb; interleukin-2 receptor subunit beta isoform X2 [KO:K05069 ]
105009518 H-2 class I histocompatibility antigen, Q9 alpha chain-like isoform X1 [KO:K06751 ]
105010034 class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
105028584 BOLA class I histocompatibility antigen, alpha chain BL3-7-like isoform X2 [KO:K06751 ]
114839964 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
105028062 H-2 class I histocompatibility antigen, Q10 alpha chain-like isoform X1 [KO:K06751 ]
114839965 H-2 class I histocompatibility antigen, Q10 alpha chain-like [KO:K06751 ]
105028052 H-2 class I histocompatibility antigen, Q10 alpha chain isoform X1 [KO:K06751 ]
105009516 major histocompatibility complex class I-related gene protein isoform X1 [KO:K06751 ]
114828637 H-2 class I histocompatibility antigen, Q10 alpha chain-like [KO:K06751 ]
105023574 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
105011083 rabep1; rab GTPase-binding effector protein 1 isoform X1 [KO:K12480 ]
105021328 rufy2; RUN and FYVE domain-containing protein 2 isoform X2 [KO:K12482 ]
105012695 vps45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
105015855 uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 isoform X1 [KO:K12484 ]
105021268 rab11fip3; rab11 family-interacting protein 3 isoform X2 [KO:K12485 ]
105006217 partitioning defective 6 homolog gamma-like isoform X1 [KO:K06093 ]
105010637 stromal membrane-associated protein 1-like isoform X1 [KO:K12486 ]
105005697 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
105006543 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
105019382 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
105024511 asap1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
105026581 asap2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
105006207 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12489 ]
105013664 acap3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 isoform X3 [KO:K12489 ]
105029825 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X2 [KO:K12489 ]
105020631 acap1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12489 ]
105025348 acap2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
105029110 arap1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
105024637 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
105025986 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 [KO:K18439 ]
105020781 arap2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K18440 ]
105007474 arap3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
105023125 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X6 [KO:K12491 ]
105019589 agap3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
105013611 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K17848 ]
105017076 arfgap1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
105020406 arfgap3; ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
105025326 arfgap2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
105013163 IQ motif and SEC7 domain-containing protein 1 isoform X4 [KO:K12495 ]
105022235 IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
105020425 iqsec3; IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
105022406 IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
105029144 IQ motif and SEC7 domain-containing protein 1 isoform X2 [KO:K12495 ]
105013755 arfgef2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 isoform X1 [KO:K18442 ]
105019582 brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X3 [KO:K18442 ]
105018391 brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442 ]
105010729 gbf1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
els04060 Cytokine-cytokine receptor interaction
els04070 Phosphatidylinositol signaling system
els04130 SNARE interactions in vesicular transport
KO pathway
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