KEGG   PATHWAY: gfr04110
Entry
gfr04110                    Pathway                                
Name
Cell cycle - Geospiza fortis (medium ground-finch)
Description
Mitotic cell cycle progression is accomplished through a reproducible sequence of events, DNA replication (S phase) and mitosis (M phase) separated temporally by gaps known as G1 and G2 phases. Cyclin-dependent kinases (CDKs) are key regulatory enzymes, each consisting of a catalytic CDK subunit and an activating cyclin subunit. CDKs regulate the cell's progression through the phases of the cell cycle by modulating the activity of key substrates. Downstream targets of CDKs include transcription factor E2F and its regulator Rb. Precise activation and inactivation of CDKs at specific points in the cell cycle are required for orderly cell division. Cyclin-CDK inhibitors (CKIs), such as p16Ink4a, p15Ink4b, p27Kip1, and p21Cip1, are involved in the negative regulation of CDK activities, thus providing a pathway through which the cell cycle is negatively regulated.
 Eukaryotic cells respond to DNA damage by activating signaling pathways that promote cell cycle arrest and DNA repair. In response to DNA damage, the checkpoint kinase ATM phosphorylates and activates Chk2, which in turn directly phosphorylates and activates p53 tumor suppressor protein. p53 and its transcriptional targets play an important role in both G1 and G2 checkpoints. ATR-Chk1-mediated protein degradation of Cdc25A protein phosphatase is also a mechanism conferring intra-S-phase checkpoint activation.
Class
Cellular Processes; Cell growth and death
Pathway map
gfr04110  Cell cycle
gfr04110

Other DBs
GO: 0000278
Organism
Geospiza fortis (medium ground-finch) [GN:gfr]
Gene
102042858  CCND1; cyclin D1 [KO:K04503]
102034688  CCND2; cyclin D2 [KO:K10151]
102033692  CCND3; cyclin D3 [KO:K10152]
102034159  CDK6; cyclin dependent kinase 6 [KO:K02091] [EC:2.7.11.22]
102036868  RB1; RB transcriptional corepressor 1 [KO:K06618]
102034865  RBL1; RB transcriptional corepressor like 1 [KO:K04681]
102044028  RBL2; RB transcriptional corepressor like 2 [KO:K16332]
102042232  ABL1; ABL proto-oncogene 1, non-receptor tyrosine kinase [KO:K06619] [EC:2.7.10.2]
102038486  HDAC2; histone deacetylase 2 [KO:K06067] [EC:3.5.1.98]
102045090  HDAC1; histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
102032688  E2F1; E2F transcription factor 1 [KO:K17454]
102036661  E2F2; transcription factor E2F2 [KO:K09389]
102039591  E2F3; E2F transcription factor 3 [KO:K06620]
102032445  E2F4; E2F transcription factor 4 [KO:K04682]
102037886  E2F5; E2F transcription factor 5 [KO:K04682]
102036523  TFDP1; transcription factor Dp-1 [KO:K04683]
102042356  TFDP2; transcription factor Dp-2 [KO:K09392]
102034944  GSK3B; glycogen synthase kinase 3 beta [KO:K03083] [EC:2.7.11.26]
102037698  TGFB2; transforming growth factor beta 2 [KO:K13376]
102037028  TGFB3; transforming growth factor beta 3 [KO:K13377]
102040865  mothers against decapentaplegic homolog 2-like [KO:K04500]
102044404  SMAD2; SMAD family member 2 [KO:K04500]
102040325  SMAD3; SMAD family member 3 [KO:K23605]
102041942  mothers against decapentaplegic homolog 4-like [KO:K04501]
102043998  SMAD4; SMAD family member 4 [KO:K04501]
102035988  ZBTB17; zinc finger and BTB domain containing 17 [KO:K10500]
102034516  CDKN2C; cyclin dependent kinase inhibitor 2C [KO:K06622]
102045566  CDKN1B; cyclin dependent kinase inhibitor 1B [KO:K06624]
102041135  CDKN1A; cyclin dependent kinase inhibitor 1A [KO:K06625]
102043017  CCNE2; cyclin E2 [KO:K06626]
102040569  CCNE1; cyclin E1 [KO:K06626]
102038546  SKP1; S-phase kinase associated protein 1 [KO:K03094]
102038503  CUL1; cullin 1 [KO:K03347]
102037823  RBX1; ring-box 1 [KO:K03868] [EC:2.3.2.32]
102037500  SKP2; S-phase kinase associated protein 2 [KO:K03875]
102043650  CCNA1; cyclin A1 [KO:K06627]
102032849  CCNA2; cyclin A2 [KO:K06627]
102033975  CDC6; cell division control protein 6 homolog [KO:K02213]
102036886  CDT1; chromatin licensing and DNA replication factor 1 [KO:K10727]
102035920  ORC1; origin recognition complex subunit 1 [KO:K02603]
102034208  ORC2; origin recognition complex subunit 2 [KO:K02604]
102040713  ORC3; origin recognition complex subunit 3 [KO:K02605]
102039050  ORC4; origin recognition complex subunit 4 [KO:K02606]
102045639  ORC5; origin recognition complex subunit 5 [KO:K02607]
102041407  ORC6; origin recognition complex subunit 6 [KO:K02608]
102043349  MCM2; minichromosome maintenance complex component 2 [KO:K02540] [EC:5.6.2.3]
102044581  MCM3; minichromosome maintenance complex component 3 [KO:K02541] [EC:5.6.2.3]
102044176  MCM4; minichromosome maintenance complex component 4 [KO:K02212] [EC:5.6.2.3]
102032440  MCM5; minichromosome maintenance complex component 5 [KO:K02209] [EC:5.6.2.3]
102041085  MCM6; minichromosome maintenance complex component 6 [KO:K02542] [EC:5.6.2.3]
102033577  MCM7; minichromosome maintenance complex component 7 [KO:K02210] [EC:5.6.2.3]
102039928  CDC45; cell division cycle 45 [KO:K06628]
102036798  TICRR; TOPBP1 interacting checkpoint and replication regulator [KO:K26117]
102035737  MTBP; MDM2 binding protein [KO:K26116]
102044566  CDC7; cell division cycle 7 [KO:K02214] [EC:2.7.11.1]
102045619  DBF4; DBF4 zinc finger [KO:K06629]
102034239  CDK1; cyclin dependent kinase 1 [KO:K02087] [EC:2.7.11.22 2.7.11.23]
102044449  CCNB2; cyclin B2 [KO:K21770]
102043430  CCNB3; G2/mitotic-specific cyclin-B3 [KO:K21771]
102043016  YWHAB; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta [KO:K16197]
102035632  YWHAZ; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [KO:K16197]
102033997  YWHAQ; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [KO:K16197]
102040391  YWHAE; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon [KO:K06630]
102035580  YWHAG; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma [KO:K16198]
102041653  YWHAH; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta [KO:K16198]
102042745  PLK1; polo like kinase 1 [KO:K06631] [EC:2.7.11.21]
102032459  WEE2; WEE1 homolog 2 [KO:K06632] [EC:2.7.11.1]
102044984  WEE1; WEE1 G2 checkpoint kinase [KO:K06632] [EC:2.7.11.1]
102034871  CCNH; cyclin H [KO:K06634]
102043443  CDK7; cyclin dependent kinase 7 [KO:K02202] [EC:2.7.11.22 2.7.11.23]
102042185  ANAPC1; anaphase promoting complex subunit 1 [KO:K03348]
102042636  ANAPC2; anaphase promoting complex subunit 2 [KO:K03349]
102033810  CDC27; cell division cycle 27 [KO:K03350]
102036004  ANAPC4; anaphase promoting complex subunit 4 [KO:K03351]
102044742  ANAPC5; anaphase promoting complex subunit 5 [KO:K03352]
102036977  CDC16; cell division cycle 16 [KO:K03353]
102043856  ANAPC7; anaphase promoting complex subunit 7 [KO:K03354]
102038213  CDC23; cell division cycle 23 [KO:K03355]
102040249  ANAPC10; anaphase promoting complex subunit 10 [KO:K03357]
102032785  ANAPC13; anaphase promoting complex subunit 13 [KO:K12456]
102032636  ANAPC15; anaphase promoting complex subunit 15 [KO:K25228]
102039157  ANAPC16; anaphase promoting complex subunit 16 [KO:K25229]
102042968  CDC20; cell division cycle 20 [KO:K03363]
102036459  PTTG1; pituitary tumor-transforming 1 [KO:K06635]
102044437  ESPL1; extra spindle pole bodies like 1, separase [KO:K02365] [EC:3.4.22.49]
102044626  SMC1B; structural maintenance of chromosomes 1B [KO:K06636]
102040587  SMC1A; structural maintenance of chromosomes 1A [KO:K06636]
102035434  SMC3; structural maintenance of chromosomes 3 [KO:K06669]
102043624  RAD21; RAD21 cohesin complex component [KO:K06670]
102035391  RAD21L1; RAD21 cohesin complex component like 1 [KO:K06670]
102034892  cohesin subunit SA-2-like [KO:K06671]
102039753  STAG2; stromal antigen 2 [KO:K06671]
102031956  STAG1; stromal antigen 1 [KO:K06671]
102044208  ATRX; ATRX, chromatin remodeler [KO:K10779]
102036358  DDX11; DEAD/H-box helicase 11 [KO:K11273] [EC:5.6.2.7]
102034854  NIPBL; NIPBL, cohesin loading factor [KO:K06672]
102042933  nipped-B-like protein [KO:K06672]
102032751  MAU2; MAU2 sister chromatid cohesion factor [KO:K11266]
102043759  HDAC8; histone deacetylase 8 [KO:K11405] [EC:3.5.1.98]
102040994  ESCO1; establishment of sister chromatid cohesion N-acetyltransferase 1 [KO:K11268] [EC:2.3.1.-]
102039510  PDS5A; PDS5 cohesin associated factor A [KO:K11267]
102041983  PDS5B; PDS5 cohesin associated factor B [KO:K11267]
102033311  WAPL; WAPL cohesin release factor [KO:K25163]
102042294  SGO1; shugoshin 1 [KO:K11580]
102036925  PPP2CA; protein phosphatase 2 catalytic subunit alpha [KO:K04382] [EC:3.1.3.16]
102042538  PPP2CB; protein phosphatase 2 catalytic subunit beta [KO:K04382] [EC:3.1.3.16]
102031820  PPP2R5C; protein phosphatase 2 regulatory subunit B'gamma [KO:K11584]
102039573  PPP2R5E; protein phosphatase 2 regulatory subunit B'epsilon [KO:K11584]
102041034  PPP2R5A; protein phosphatase 2 regulatory subunit B'alpha [KO:K11584]
102035456  PPP2R5D; protein phosphatase 2 regulatory subunit B'delta [KO:K11584]
102039575  NDC80; NDC80, kinetochore complex component [KO:K11547]
106631942  KNL1; kinetochore scaffold 1 [KO:K11542]
102044289  TTK; TTK protein kinase [KO:K08866] [EC:2.7.12.1]
102043620  MAD1L1; MAD1 mitotic arrest deficient like 1 [KO:K06679]
102034691  MAD2L1; MAD2 mitotic arrest deficient-like 1 (yeast) [KO:K02537]
102033397  MAD2L2; MAD2 mitotic arrest deficient-like 2 (yeast) [KO:K13728]
102045196  BUB1B; BUB1 mitotic checkpoint serine/threonine kinase B [KO:K06637] [EC:2.7.11.1]
102040620  BUB3; BUB3, mitotic checkpoint protein [KO:K02180]
102041853  BUB1; BUB1 mitotic checkpoint serine/threonine kinase [KO:K02178] [EC:2.7.11.1]
102044684  TRIP13; thyroid hormone receptor interactor 13 [KO:K22399]
102043386  MAD2L1BP; MAD2L1 binding protein [KO:K26093]
102033016  FZR1; fizzy/cell division cycle 20 related 1 [KO:K03364]
102037876  FBXO5; F-box protein 5 [KO:K10292]
102035794  CDC14A; exostosin-like 2 [KO:K06639] [EC:3.1.3.16 3.1.3.48]
102034637  CDC14B; cell division cycle 14B [KO:K06639] [EC:3.1.3.16 3.1.3.48]
102038495  EP300; E1A binding protein p300 [KO:K04498] [EC:2.3.1.48]
102043483  CREBBP; CREB binding protein [KO:K04498] [EC:2.3.1.48]
102042450  PRKDC; protein kinase, DNA-activated, catalytic polypeptide [KO:K06642] [EC:2.7.11.1]
102032229  ATR; ATR serine/threonine kinase [KO:K06640] [EC:2.7.11.1]
102041787  MDM2; MDM2 proto-oncogene [KO:K06643] [EC:2.3.2.27]
102042764  PCNA; proliferating cell nuclear antigen [KO:K04802]
102038349  SFN; stratifin [KO:K06644]
102039036  CHEK1; checkpoint kinase 1 [KO:K02216] [EC:2.7.11.1]
102038788  CHEK2; checkpoint kinase 2 [KO:K06641] [EC:2.7.11.1]
102040683  CDC25A; cell division cycle 25A [KO:K06645] [EC:3.1.3.48]
Reference
PMID:7908906
  Authors
Matsuoka S, Yamaguchi M, Matsukage A
  Title
D-type cyclin-binding regions of proliferating cell nuclear antigen.
  Journal
J Biol Chem 269:11030-6 (1994)
Reference
PMID:8242749
  Authors
Welch PJ, Wang JY
  Title
A C-terminal protein-binding domain in the retinoblastoma protein regulates nuclear c-Abl tyrosine kinase in the cell cycle.
  Journal
Cell 75:779-90 (1993)
DOI:10.1016/0092-8674(93)90497-E
Reference
  Authors
Macaluso M, Montanari M, Giordano A
  Title
Rb family proteins as modulators of gene expression and new aspects regarding the interaction with chromatin remodeling enzymes.
  Journal
Oncogene 25:5263-7 (2006)
DOI:10.1038/sj.onc.1209680
Reference
  Authors
Cobrinik D
  Title
Pocket proteins and cell cycle control.
  Journal
Oncogene 24:2796-809 (2005)
DOI:10.1038/sj.onc.1208619
Reference
  Authors
Boutros R, Lobjois V, Ducommun B
  Title
CDC25 phosphatases in cancer cells: key players? Good targets?
  Journal
Nat Rev Cancer 7:495-507 (2007)
DOI:10.1038/nrc2169
Reference
PMID:9832503
  Authors
Diehl JA, Cheng M, Roussel MF, Sherr CJ
  Title
Glycogen synthase kinase-3beta regulates cyclin D1 proteolysis and subcellular localization.
  Journal
Genes Dev 12:3499-511 (1998)
DOI:10.1101/gad.12.22.3499
Reference
  Authors
Klein EA, Assoian RK
  Title
Transcriptional regulation of the cyclin D1 gene at a glance.
  Journal
J Cell Sci 121:3853-7 (2008)
DOI:10.1242/jcs.039131
Reference
  Authors
Sherr CJ, Roberts JM
  Title
CDK inhibitors: positive and negative regulators of G1-phase progression.
  Journal
Genes Dev 13:1501-12 (1999)
DOI:10.1101/gad.13.12.1501
Reference
  Authors
Shi Y, Massague J.
  Title
Mechanisms of TGF-beta signaling from cell membrane to the nucleus.
  Journal
Cell 113:685-700 (2003)
DOI:10.1016/S0092-8674(03)00432-X
Reference
  Authors
Kamura T, Hara T, Kotoshiba S, Yada M, Ishida N, Imaki H, Hatakeyama S, Nakayama K, Nakayama KI
  Title
Degradation of p57Kip2 mediated by SCFSkp2-dependent ubiquitylation.
  Journal
Proc Natl Acad Sci U S A 100:10231-6 (2003)
DOI:10.1073/pnas.1831009100
Reference
  Authors
Bond M, Sala-Newby GB, Wu YJ, Newby AC
  Title
Biphasic effect of p21Cip1 on smooth muscle cell proliferation: role of PI 3-kinase and Skp2-mediated degradation.
  Journal
Cardiovasc Res 69:198-206 (2006)
DOI:10.1016/j.cardiores.2005.08.020
Reference
  Authors
Harris SL, Levine AJ.
  Title
The p53 pathway: positive and negative feedback loops.
  Journal
Oncogene 24:2899-908 (2005)
DOI:10.1038/sj.onc.1208615
Reference
  Authors
Vogelstein B, Lane D, Levine AJ
  Title
Surfing the p53 network.
  Journal
Nature 408:307-10 (2000)
DOI:10.1038/35042675
Reference
PMID:7973727
  Authors
Smith ML, Chen IT, Zhan Q, Bae I, Chen CY, Gilmer TM, Kastan MB, O'Connor PM, Fornace AJ Jr
  Title
Interaction of the p53-regulated protein Gadd45 with proliferating cell nuclear antigen.
  Journal
Science 266:1376-80 (1994)
DOI:10.1126/science.7973727
Reference
PMID:9889196
  Authors
Petersen BO, Lukas J, Sorensen CS, Bartek J, Helin K
  Title
Phosphorylation of mammalian CDC6 by cyclin A/CDK2 regulates its subcellular localization.
  Journal
EMBO J 18:396-410 (1999)
DOI:10.1093/emboj/18.2.396
Reference
  Authors
Sheu YJ, Stillman B
  Title
Cdc7-Dbf4 phosphorylates MCM proteins via a docking site-mediated mechanism to promote S phase progression.
  Journal
Mol Cell 24:101-13 (2006)
DOI:10.1016/j.molcel.2006.07.033
Reference
PMID:9029154
  Authors
Martinez AM, Afshar M, Martin F, Cavadore JC, Labbe JC, Doree M
  Title
Dual phosphorylation of the T-loop in cdk7: its role in controlling cyclin H binding and CAK activity.
  Journal
EMBO J 16:343-54 (1997)
DOI:10.1093/emboj/16.2.343
Reference
  Authors
Lolli G, Johnson LN
  Title
CAK-Cyclin-dependent Activating Kinase: a key kinase in cell cycle control and a target for drugs?
  Journal
Cell Cycle 4:572-7 (2005)
DOI:10.4161/cc.4.4.1607
Reference
  Authors
Musacchio A, Salmon ED
  Title
The spindle-assembly checkpoint in space and time.
  Journal
Nat Rev Mol Cell Biol 8:379-93 (2007)
DOI:10.1038/nrm2163
Reference
  Authors
Uhlmann F
  Title
Chromosome cohesion and separation: from men and molecules.
  Journal
Curr Biol 13:R104-14 (2003)
DOI:10.1016/S0960-9822(03)00039-3
Reference
  Authors
Stegmeier F, Amon A
  Title
Closing mitosis: the functions of the Cdc14 phosphatase and its regulation.
  Journal
Annu Rev Genet 38:203-32 (2004)
DOI:10.1146/annurev.genet.38.072902.093051
Reference
PMID:9618481
  Authors
Moustakas A, Kardassis D
  Title
Regulation of the human p21/WAF1/Cip1 promoter in hepatic cells by functional interactions between Sp1 and Smad family members.
  Journal
Proc Natl Acad Sci U S A 95:6733-8 (1998)
DOI:10.1073/pnas.95.12.6733
Reference
  Authors
de Boer HR, Guerrero Llobet S, van Vugt MA
  Title
Controlling the response to DNA damage by the APC/C-Cdh1.
  Journal
Cell Mol Life Sci 73:949-60 (2016)
DOI:10.1007/s00018-015-2096-7
Reference
  Authors
Qiao X, Zhang L, Gamper AM, Fujita T, Wan Y
  Title
APC/C-Cdh1: from cell cycle to cellular differentiation and genomic integrity.
  Journal
Cell Cycle 9:3904-12 (2010)
DOI:10.4161/cc.9.19.13585
Related
pathway
gfr03030  DNA replication
gfr04010  MAPK signaling pathway
gfr04120  Ubiquitin mediated proteolysis
gfr04210  Apoptosis
KO pathway
ko04110   
LinkDB

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