KEGG   PATHWAY: mfot04120
Entry
mfot04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Microtus fortis (reed vole)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mfot04120  Ubiquitin mediated proteolysis
mfot04120

Other DBs
GO: 0016567
Organism
Microtus fortis (reed vole) [GN:mfot]
Gene
126491796  ubiquitin-60S ribosomal protein L40 isoform X1 [KO:K02927]
126507874  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
126487465  ubiquitin-60S ribosomal protein L40 [KO:K02927]
126497101  ubiquitin-like [KO:K02927]
126492336  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
126500815  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
126508121  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
126488984  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
126489541  ubiquitin-40S ribosomal protein S27a [KO:K02977]
126512868  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
126493328  SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
126486642  SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
126506055  NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
126499981  ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
126506326  ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
126488428  ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
126510985  ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
126507012  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
126498391  ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
126500931  ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
126501279  ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
126509674  ubiquitin-conjugating enzyme E2 D2B [KO:K06689] [EC:2.3.2.23]
126497079  ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
126500578  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
126500645  ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
126487543  ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
126514261  NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
126513893  ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
126500152  ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
126501050  ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
126489080  SUMO-conjugating enzyme UBC9 [KO:K10577]
126503653  ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
126493188  ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
126506254  ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
126492960  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
126501082  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
126488985  ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
126509559  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
126487844  ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
126493826  NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
126488408  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
126497351  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
126503716  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
126500441  (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
126512918  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
126486941  ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
126503185  ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
126516141  ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
126489246  ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
126509921  ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
126493684  ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
126498094  ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
126501406  ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
126510240  ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
126514220  baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
126500339  ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
126487982  ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
126487210  ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
126514971  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
126489821  E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
126506974  E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
126486751  NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
126502801  NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
126508849  E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
126490568  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
126511101  E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
126494037  E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
126514450  E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
126490850  probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
126500299  E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
126494383  probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
126500808  probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
126510030  ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
126508227  ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
126486971  E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
126488995  RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
126498916  pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
126495467  pre-mRNA-processing factor 19-like [KO:K10599] [EC:2.3.2.27]
126496200  pre-mRNA-processing factor 19-like [KO:K10599] [EC:2.3.2.27]
126496029  RING finger protein 37 isoform X1 [KO:K10600]
126515657  E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
126487354  E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
126514504  E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
126490978  E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
126497719  E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
126487802  E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
126507457  protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
126504640  TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
126507983  mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
126497235  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
126505710  RING finger and CHY zinc finger domain-containing protein 1-like [KO:K10144] [EC:2.3.2.27]
126506417  RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
126513679  baculoviral IAP repeat-containing protein 3-like [KO:K16060]
126513689  baculoviral IAP repeat-containing protein 2 [KO:K16060]
126486568  E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
126508084  baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
126507400  E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
126507298  E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
126490080  E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
126489323  E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
126498412  E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
126502528  E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
126501068  autoimmune regulator [KO:K10603]
126497567  E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
126510109  breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
126488304  E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
126487945  E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
126488371  E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
126486978  E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
126492120  E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
126501446  E3 ubiquitin-protein ligase RBX1-like [KO:K03868] [EC:2.3.2.32]
126515064  cullin-1 [KO:K03347]
126503398  LOW QUALITY PROTEIN: S-phase kinase-associated protein 1-like [KO:K03094]
126510984  S-phase kinase-associated protein 1 [KO:K03094]
126504817  F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
126491292  F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
126499685  S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
126488277  S-phase kinase-associated protein 2-like [KO:K03875]
126511564  F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
126508192  F-box only protein 2 [KO:K10099]
126499752  F-box only protein 4 isoform X1 [KO:K10291]
126507870  cullin-2 [KO:K03870]
126498927  elongin-C-like [KO:K03872]
126501407  elongin-C [KO:K03872]
126515004  elongin-C-like [KO:K03872]
126513547  elongin-B-like [KO:K03873]
126494140  elongin-B-like [KO:K03873]
126498192  elongin-B [KO:K03873]
126505480  von Hippel-Lindau disease tumor suppressor [KO:K03871]
126512996  cullin-3 isoform X1 [KO:K03869]
126490522  kelch-like ECH-associated protein 1 isoform X1 [KO:K10456]
126488449  kelch-like protein 13 isoform X1 [KO:K10447]
126510705  kelch-like protein 9 [KO:K10447]
126499904  rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
126498637  cullin-4A [KO:K10609]
126494663  cullin-4B isoform X1 [KO:K10609]
126491104  cullin-4B-like [KO:K10609]
126498120  DNA damage-binding protein 1 isoform X1 [KO:K10610]
126489766  DNA damage-binding protein 2 isoform X1 [KO:K10140]
126512587  DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
126508715  DET1 homolog isoform X1 [KO:K10571]
126510667  RING-box protein 2 isoform X1 [KO:K10611]
126486912  cullin-5 [KO:K10612]
126514821  suppressor of cytokine signaling 1 [KO:K04694]
126500505  suppressor of cytokine signaling 3 [KO:K04696]
126488950  cullin-7 isoform X1 [KO:K10613]
126511677  F-box/WD repeat-containing protein 8 [KO:K10264]
126512777  anaphase-promoting complex subunit 11-like [KO:K03358]
126500337  anaphase-promoting complex subunit 11 [KO:K03358]
126510013  anaphase-promoting complex subunit 11-like [KO:K03358]
126509244  anaphase-promoting complex subunit 2 [KO:K03349]
126513156  cell division cycle protein 20 homolog [KO:K03363]
126489295  fizzy-related protein homolog [KO:K03364]
126495675  anaphase-promoting complex subunit 1 [KO:K03348]
126487531  cell division cycle protein 27 homolog isoform X1 [KO:K03350]
126506215  anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
126504202  anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
126498211  cell division cycle protein 16 homolog isoform X1 [KO:K03353]
126511650  anaphase-promoting complex subunit 7 [KO:K03354]
126497040  cell division cycle protein 23 homolog [KO:K03355]
126513257  anaphase-promoting complex subunit 10 [KO:K03357]
126493903  anaphase-promoting complex subunit CDC26 [KO:K03359]
126515294  anaphase-promoting complex subunit CDC26-like [KO:K03359]
126498035  anaphase-promoting complex subunit CDC26 [KO:K03359]
126499871  anaphase-promoting complex subunit 13 [KO:K12456]
126488837  anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
126500338  anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mfot03050  Proteasome
KO pathway
ko04120   
LinkDB

DBGET integrated database retrieval system