KEGG   PATHWAY: oki03082
Entry
oki03082                    Pathway                                
Name
ATP-dependent chromatin remodeling - Oncorhynchus kisutch (coho salmon)
Class
Genetic Information Processing; Chromosome
Pathway map
oki03082  ATP-dependent chromatin remodeling
oki03082

Organism
Oncorhynchus kisutch (coho salmon) [GN:oki]
Gene
116374662  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like [KO:K11654] [EC:5.6.2.-]
109901297  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like [KO:K11654] [EC:5.6.2.-]
109894330  baz1a; bromodomain adjacent to zinc finger domain protein 1A isoform X1 [KO:K11655]
109904244  bromodomain adjacent to zinc finger domain protein 1A-like isoform X1 [KO:K11655]
109909025  tyrosine-protein kinase BAZ1B-like [KO:K11658]
109905572  tyrosine-protein kinase BAZ1B [KO:K11658]
109869756  bromodomain adjacent to zinc finger domain protein 2A-like isoform X1 [KO:K15224]
109907787  bromodomain adjacent to zinc finger domain protein 2A-like isoform X1 [KO:K15224]
109871163  baz2b; bromodomain adjacent to zinc finger domain protein 2B isoform X1 [KO:K26167]
109866128  bromodomain adjacent to zinc finger domain protein 2B isoform X1 [KO:K26167]
109907219  chromatin accessibility complex protein 1-like [KO:K11656]
109903375  chromatin accessibility complex protein 1 [KO:K11656]
109868433  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
109905637  remodeling and spacing factor 1 isoform X1 [KO:K11657]
109873406  remodeling and spacing factor 1 isoform X1 [KO:K11657]
109892892  remodeling and spacing factor 1-like [KO:K11657]
109909414  remodeling and spacing factor 1-like [KO:K11657]
109892600  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11727] [EC:5.6.2.-]
109872877  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11727] [EC:5.6.2.-]
109892005  nucleosome-remodeling factor subunit BPTF-like isoform X1 [KO:K11728]
109888832  nucleosome-remodeling factor subunit BPTF isoform X1 [KO:K11728]
109865269  nucleosome-remodeling factor subunit BPTF isoform X3 [KO:K11728]
109897378  nucleosome-remodeling factor subunit BPTF-like isoform X1 [KO:K11728]
109884903  histone-binding protein RBBP7 isoform X1 [KO:K10752]
116352732  histone-binding protein RBBP7 isoform X1 [KO:K10752]
109894561  histone-binding protein RBBP4-like isoform X1 [KO:K10752]
109903980  histone-binding protein RBBP4 isoform X1 [KO:K10752]
109896864  chromatin complexes subunit BAP18 isoform X1 [KO:K23406]
109892696  chromatin complexes subunit BAP18-like [KO:K23406]
109872451  lg28h17orf49; chromatin complexes subunit BAP18 [KO:K23406]
109882637  chromatin complexes subunit BAP18-like isoform X2 [KO:K23406]
109888897  cat eye syndrome critical region protein 2 homolog [KO:K25830]
109867119  cat eye syndrome critical region protein 2 isoform X1 [KO:K25830]
109897009  chromodomain-helicase-DNA-binding protein 3-like isoform X4 [KO:K11642] [EC:5.6.2.-]
109906248  chromodomain-helicase-DNA-binding protein 3-like isoform X1 [KO:K11642] [EC:5.6.2.-]
109900596  chromodomain-helicase-DNA-binding protein 4-like isoform X1 [KO:K11643] [EC:5.6.2.-]
109886607  chromodomain-helicase-DNA-binding protein 4-like isoform X1 [KO:K11643] [EC:5.6.2.-]
109907551  chromodomain-helicase-DNA-binding protein 4-like isoform X1 [KO:K11643] [EC:5.6.2.-]
109903634  chromodomain-helicase-DNA-binding protein 4-like isoform X11 [KO:K11643] [EC:5.6.2.-]
109904367  probable histone deacetylase 1-B isoform X1 [KO:K06067] [EC:3.5.1.98]
109907126  probable histone deacetylase 1-B [KO:K06067] [EC:3.5.1.98]
109894588  probable histone deacetylase 1-B [KO:K06067] [EC:3.5.1.98]
109866626  histone deacetylase 2 [KO:K06067] [EC:3.5.1.98]
109903961  histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
109885555  methyl-CpG-binding domain protein 2-like [KO:K11590]
109876729  methyl-CpG-binding domain protein 2-like [KO:K11590]
109897847  methyl-CpG-binding domain protein 3 isoform X1 [KO:K11591]
109872009  methyl-CpG-binding domain protein 3 isoform X2 [KO:K11591]
109902499  methyl-CpG-binding domain protein 3-like isoform X1 [KO:K11591]
109875207  methyl-CpG-binding domain protein 3 isoform X1 [KO:K11591]
109897113  metastasis-associated protein MTA2 isoform X1 [KO:K11660]
109906598  metastasis-associated protein MTA2 isoform X1 [KO:K11660]
116353342  metastasis-associated protein MTA1-like isoform X1 [KO:K11660]
109870315  metastasis-associated protein MTA3 isoform X1 [KO:K11660]
109894282  metastasis-associated protein MTA1-like [KO:K11660]
109865112  metastasis-associated protein MTA3-like isoform X1 [KO:K11660]
109889224  transcriptional repressor p66-alpha isoform X2 [KO:K23194]
109907959  transcriptional repressor p66-beta-like isoform X1 [KO:K23194]
109904432  transcriptional repressor p66-beta-like isoform X1 [KO:K23194]
109871994  transcriptional repressor p66 alpha-like isoform X1 [KO:K23194]
109901941  transcriptional repressor p66-beta isoform X1 [KO:K23194]
109902471  transcriptional repressor p66-alpha isoform X1 [KO:K23194]
109907415  transcriptional repressor p66-beta isoform X1 [KO:K23194]
109874996  transcriptional repressor p66 alpha isoform X1 [KO:K23194]
109904972  phf6; PHD finger protein 6 [KO:K23310]
109870633  uncharacterized protein LOC109870633 isoform X2 [KO:K23310]
109868723  cyclin-dependent kinase 2-associated protein 1-like [KO:K26454]
109892435  cyclin-dependent kinase 2-associated protein 1 isoform X2 [KO:K26454]
109880078  cyclin-dependent kinase 2-associated protein 1 [KO:K26454]
109894179  cyclin-dependent kinase 2-associated protein 2-like [KO:K26455]
109901094  cyclin-dependent kinase 2-associated protein 2-like isoform X1 [KO:K26455]
109882552  probable global transcription activator SNF2L2 isoform X1 [KO:K11647] [EC:5.6.2.-]
109891995  transcription activator BRG1-like isoform X1 [KO:K11647] [EC:5.6.2.-]
109883093  transcription activator BRG1 isoform X1 [KO:K11647] [EC:5.6.2.-]
109868271  smarcb1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1 [KO:K11648]
109878093  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [KO:K11648]
109873543  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [KO:K11648]
109891128  SWI/SNF complex subunit SMARCC2 isoform X2 [KO:K11649]
109908555  SWI/SNF complex subunit SMARCC1-like [KO:K11649]
109902005  SWI/SNF complex subunit SMARCC1-like isoform X1 [KO:K11649]
109874237  SWI/SNF complex subunit SMARCC2 isoform X1 [KO:K11649]
109908363  SWI/SNF complex subunit SMARCC1 isoform X1 [KO:K11649]
109908805  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1 [KO:K11650]
109899460  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1 [KO:K11650]
109879084  smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [KO:K11650]
109899944  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1 [KO:K11650]
109865569  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 [KO:K11650]
109889190  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 [KO:K11651]
109898536  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1 [KO:K11651]
109898559  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X3 [KO:K11651]
109865959  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 [KO:K11651]
109879560  actin, cytoplasmic 1 [KO:K05692]
109886701  actin, cytoplasmic 1-like [KO:K05692]
109886207  actin, cytoplasmic 1 isoform X1 [KO:K05692]
109879558  actin, cytoplasmic 1 isoform X1 [KO:K05692]
109902261  actin-like protein 6A isoform X1 [KO:K11340]
109881258  actin-like protein 6A [KO:K11340]
109909024  B-cell CLL/lymphoma 7 protein family member B-B-like [KO:K25605]
109905579  B-cell CLL/lymphoma 7 protein family member B-B-like [KO:K25605]
109877941  B-cell CLL/lymphoma 7 protein family member A-like isoform X1 [KO:K25605]
109892054  B-cell CLL/lymphoma 7 protein family member A isoform X2 [KO:K25605]
109892828  B-cell CLL/lymphoma 7 protein family member B-A [KO:K25605]
109872600  B-cell CLL/lymphoma 7 protein family member B-A-like [KO:K25605]
109879928  B-cell CLL/lymphoma 7 protein family member A isoform X1 [KO:K25605]
109895916  bcl7a; B-cell CLL/lymphoma 7 protein family member A isoform X1 [KO:K25605]
109869495  calcium-responsive transactivator-like isoform X6 [KO:K15623]
109871665  ss18; protein SSXT isoform X1 [KO:K15623]
109907777  calcium-responsive transactivator isoform X1 [KO:K15623]
109874673  protein SSXT isoform X1 [KO:K15623]
109893780  AT-rich interactive domain-containing protein 1B [KO:K11653]
109879593  LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A [KO:K11653]
109865197  AT-rich interactive domain-containing protein 1A isoform X1 [KO:K11653]
109902231  AT-rich interactive domain-containing protein 1A-like isoform X1 [KO:K11653]
109900605  AT-rich interactive domain-containing protein 1B-like isoform X1 [KO:K11653]
109866595  AT-rich interactive domain-containing protein 1B isoform X1 [KO:K11653]
109903512  AT-rich interactive domain-containing protein 1A isoform X1 [KO:K11653]
109903937  arid1b; AT-rich interactive domain-containing protein 1B isoform X2 [KO:K11653]
109908986  LOW QUALITY PROTEIN: zinc finger protein neuro-d4 [KO:K22198]
109904792  zinc finger protein neuro-d4-like [KO:K22198]
109894515  zinc finger protein DPF3 [KO:K22198]
109880794  LOW QUALITY PROTEIN: zinc finger protein DPF3-like [KO:K22198]
116356187  zinc finger protein DPF3-like isoform X1 [KO:K22198]
109904036  zinc finger protein DPF3-like [KO:K22198]
109864953  zinc finger protein ubi-d4-like isoform X1 [KO:K13196]
109873093  dpf2; zinc finger protein ubi-d4 isoform X1 [KO:K13196]
109880732  zinc finger protein ubi-d4 isoform X1 [KO:K13196]
109874053  zinc finger protein ubi-d4 isoform X1 [KO:K13196]
109896572  AT-rich interactive domain-containing protein 2 isoform X1 [KO:K11765]
116352763  AT-rich interactive domain-containing protein 2-like isoform X1 [KO:K11765]
109891287  protein polybromo-1 isoform X1 [KO:K11757]
109893375  protein polybromo-1-like isoform X1 [KO:K11757]
109895348  pbrm1; protein polybromo-1 [KO:K11757]
109881367  bromodomain-containing protein 7-like isoform X2 [KO:K11723]
109881650  brd7; bromodomain-containing protein 7 [KO:K11723]
109870049  phf10; PHD finger protein 10 [KO:K22197]
109900081  PHD finger protein 10 isoform X1 [KO:K22197]
116373140  bromodomain-containing protein 9-like [KO:K22184]
109886657  brd9; bromodomain-containing protein 9 isoform X1 [KO:K22184]
109880845  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X1 [KO:K25612]
109881140  bicra; BRD4-interacting chromatin-remodeling complex-associated protein isoform X1 [KO:K25612]
109869993  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X1 [KO:K25613]
109865343  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X1 [KO:K25613]
109884180  ino80; LOW QUALITY PROTEIN: chromatin-remodeling ATPase INO80 [KO:K11665] [EC:5.6.2.-]
109896945  INO80 complex subunit B isoform X1 [KO:K11666]
109906415  INO80 complex subunit B-like isoform X1 [KO:K11666]
109877378  INO80 complex subunit C-like [KO:K11667]
109877469  INO80 complex subunit C-like [KO:K11667]
109871084  INO80 complex subunit D-like [KO:K11668]
109867001  ino80d; INO80 complex subunit D [KO:K11668]
109901889  ino80e; INO80 complex subunit E isoform X1 [KO:K11669]
109887957  TCF3 fusion partner homolog isoform X1 [KO:K11670]
109884475  TCF3 fusion partner homolog isoform X2 [KO:K11670]
109872708  LOW QUALITY PROTEIN: nuclear factor related to kappa-B-binding protein-like [KO:K11671]
109874286  nuclear factor related to kappa-B-binding protein isoform X1 [KO:K11671]
109894651  mcrs1; microspherule protein 1 [KO:K11674]
109898054  ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X1 [KO:K05610] [EC:3.4.19.12]
109902737  ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform X1 [KO:K05610] [EC:3.4.19.12]
109891158  ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
109895611  ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
109873018  ruvbl2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
109907809  actr5; actin-related protein 5 [KO:K11672]
109869307  actr8; actin-related protein 8 isoform X1 [KO:K11673]
109878080  transcriptional repressor protein YY1-like isoform X3 [KO:K09201]
109900963  transcriptional repressor protein YY1-like isoform X1 [KO:K09201]
109894704  transcriptional repressor protein YY1 [KO:K09201]
109903818  transcriptional repressor protein YY1-like isoform X2 [KO:K09201]
109870123  helicase SRCAP isoform X1 [KO:K11661] [EC:5.6.2.-]
109865421  helicase SRCAP isoform X1 [KO:K11661] [EC:5.6.2.-]
109889044  dmap1; DNA methyltransferase 1-associated protein 1 isoform X1 [KO:K11324]
116352681  YEATS domain-containing protein 4 isoform X1 [KO:K11341]
109884575  YEATS domain-containing protein 4 [KO:K11341]
109907649  vps72; vacuolar protein sorting-associated protein 72 homolog isoform X1 [KO:K11664]
116370668  histone H2A [KO:K11251]
109896199  histone H2A.V isoform X1 [KO:K11251]
116372472  histone H2A [KO:K11251]
116372474  histone H2A [KO:K11251]
116372480  histone H2A-like isoform X1 [KO:K11251]
109868446  histone H2A.V [KO:K11251]
109906538  histone H2A.Z [KO:K11251]
109873320  core histone macro-H2A.1 isoform X1 [KO:K11251]
109889890  core histone macro-H2A.2 [KO:K11251]
109899687  core histone macro-H2A.2-like isoform X1 [KO:K11251]
109892878  histone H2A [KO:K11251]
109873042  histone H2AX [KO:K11251]
109881003  histone H2A.Z [KO:K11251]
109881338  late histone H2A.2.2 [KO:K11251]
109874190  histone H2A.V [KO:K11251]
109883822  histone H2A.V [KO:K11251]
109867488  actr6; actin-related protein 6 [KO:K11662]
109897063  zinc finger HIT domain-containing protein 1 [KO:K11663]
109891790  znhit1; zinc finger HIT domain-containing protein 1 [KO:K11663]
109873531  E1A-binding protein p400-like isoform X1 [KO:K11320] [EC:5.6.2.-]
109895823  E1A-binding protein p400-like isoform X6 [KO:K11320] [EC:5.6.2.-]
109870425  trrap; transformation/transcription domain-associated protein isoform X5 [KO:K08874]
109876883  LOW QUALITY PROTEIN: mortality factor 4-like protein 1 [KO:K11339]
109876881  mortality factor 4-like protein 1 [KO:K11339]
116368407  mortality factor 4-like protein 1 [KO:K11339]
109869088  MRG/MORF4L-binding protein-like isoform X1 [KO:K11343]
109907998  MRG/MORF4L-binding protein isoform X1 [KO:K11343]
109879781  bromodomain-containing protein 8-like isoform X1 [KO:K11321]
109864991  bromodomain-containing protein 8 isoform X1 [KO:K11321]
109874250  bromodomain-containing protein 8 isoform X1 [KO:K11321]
109896719  inhibitor of growth protein 3-like [KO:K11319]
109910369  inhibitor of growth protein 3 [KO:K11319]
109899537  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
109871243  enhancer of polycomb homolog 2 isoform X2 [KO:K11322]
109871725  enhancer of polycomb homolog 1 isoform X1 [KO:K11322]
109908739  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
109867417  enhancer of polycomb homolog 2-like isoform X1 [KO:K11322]
109875272  LOW QUALITY PROTEIN: enhancer of polycomb homolog 1-like [KO:K11322]
109907154  chromatin modification-related protein MEAF6 isoform X3 [KO:K11344]
109903440  chromatin modification-related protein MEAF6-like isoform X1 [KO:K11344]
109872847  histone acetyltransferase KAT5-like isoform X1 [KO:K11304] [EC:2.3.1.48]
109873764  histone acetyltransferase KAT5-like isoform X1 [KO:K11304] [EC:2.3.1.48]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
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