KEGG   PATHWAY: osa00270
Entry
osa00270                    Pathway                                
Name
Cysteine and methionine metabolism - Oryza sativa japonica (Japanese rice)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
osa00270  Cysteine and methionine metabolism
osa00270

Module
osa_M00021  Cysteine biosynthesis, serine => cysteine [PATH:osa00270]
osa_M00034  Methionine salvage pathway [PATH:osa00270]
osa_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:osa00270]
Other DBs
GO: 0006534 0006555
Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
107275635  [KO:K01762] [EC:4.4.1.14]
107275791  [KO:K01760] [EC:4.4.1.13]
107275839  [KO:K01611] [EC:4.1.1.50]
107275928  [KO:K01762] [EC:4.4.1.14]
107276080  [KO:K00899] [EC:2.7.1.100]
107276095  [KO:K08967] [EC:1.13.11.53 1.13.11.54]
107276273  [KO:K27857]
107276344  [KO:K01738] [EC:2.5.1.47]
107277031  [KO:K01738] [EC:2.5.1.47]
107278688  [KO:K05933] [EC:1.14.17.4]
124459651  [KO:K08967] [EC:1.13.11.53 1.13.11.54]
124958009  ARD; acireductone dioxygenase I [KO:K08967] [EC:1.13.11.53 1.13.11.54]
136351080  [KO:K00640] [EC:2.3.1.30]
136356559  [KO:K00826] [EC:2.6.1.42]
4323866  [KO:K00837]
4324194  [KO:K05933] [EC:1.14.17.4]
4324655  P0690B02.9; serine O-acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
4324713  [KO:K00547] [EC:2.1.1.10]
4325155  L-CDes1; putative L-cysteine desulfhydrase 1 isoform 1 [KO:K22207] [EC:4.4.1.28]
4325157  [KO:K22207] [EC:4.4.1.28]
4325163  METK3; S-adenosylmethionine synthase 3 isoform X1 [KO:K00789] [EC:2.5.1.6]
4325621  [KO:K14454] [EC:2.6.1.1]
4326249  [KO:K00026] [EC:1.1.1.37]
4326460  [KO:K09880] [EC:3.1.3.77]
4326958  [KO:K00928] [EC:2.7.2.4]
4326996  SAM2; S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
4327097  [KO:K00789] [EC:2.5.1.6]
4327307  ACC5; 1-aminocyclopropane-1-carboxylate synthase 5 [KO:K01762] [EC:4.4.1.14]
4327423  [KO:K00026] [EC:1.1.1.37]
4327479  [KO:K22846] [EC:2.5.1.144]
4327819  [KO:K01738] [EC:2.5.1.47]
4328012  [KO:K00016] [EC:1.1.1.27]
4328418  [KO:K01011] [EC:2.8.1.1 2.8.1.2]
4328828  [KO:K14455] [EC:2.6.1.1]
4328910  [KO:K00797] [EC:2.5.1.16]
4329098  [KO:K00815] [EC:2.6.1.5]
4329101  [KO:K00815] [EC:2.6.1.5]
4329955  [KO:K01611] [EC:4.1.1.50]
4330873  [KO:K05933] [EC:1.14.17.4]
4330881  DCD1; D-cysteine desulfhydrase 1, mitochondrial [KO:K05396] [EC:4.4.1.15]
4331017  [KO:K00811] [EC:2.6.1.1]
4331255  [KO:K00872] [EC:2.7.1.39]
4331322  [KO:K00826] [EC:2.6.1.42]
4331528  OJ1006F06.16; serine O-acetyltransferase 2 [KO:K00640] [EC:2.3.1.30]
4331707  HSFA2D; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
4331779  [KO:K00827] [EC:2.6.1.44 2.6.1.40]
4331861  SAT3; serine O-acetyltransferase 3 [KO:K00640] [EC:2.3.1.30]
4331941  SAT4; serine O-acetyltransferase 4 [KO:K00640] [EC:2.3.1.30]
4332062  [KO:K01738] [EC:2.5.1.47]
4332095  [KO:K00547] [EC:2.1.1.10]
4332128  CMT1; dNA (cytosine-5)-methyltransferase CMT1 [KO:K00558] [EC:2.1.1.37]
4332151  [KO:K00826] [EC:2.6.1.42]
4332607  NAS2; nicotianamine synthase 2 [KO:K05953] [EC:2.5.1.43]
4332608  NAS1; nicotianamine synthase 1 [KO:K05953] [EC:2.5.1.43]
4332775  [KO:K00827] [EC:2.6.1.44 2.6.1.40]
4332956  [KO:K27857]
4333976  ACS1; 1-aminocyclopropane-1-carboxylate synthase 1 [KO:K01762] [EC:4.4.1.14]
4334101  CSase; cysteine synthase [KO:K01738] [EC:2.5.1.47]
4334188  [KO:K00133] [EC:1.2.1.11]
4334274  [KO:K00026] [EC:1.1.1.37]
4334435  MET1; dNA (cytosine-5)-methyltransferase 1A isoform X1 [KO:K00558] [EC:2.1.1.37]
4334794  [KO:K00928] [EC:2.7.2.4]
4335048  [KO:K13034] [EC:2.5.1.47 4.4.1.9]
4336294  AdoMetDC; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
4336595  [KO:K00025] [EC:1.1.1.37]
4336645  [KO:K00826] [EC:2.6.1.42]
4336750  ACC2; 1-aminocyclopropane-1-carboxylate synthase 2 [KO:K20772] [EC:4.4.1.14]
4337230  [KO:K00058] [EC:1.1.1.95 1.1.1.399]
4337347  MTK1; methylthioribose kinase 1 [KO:K00899] [EC:2.7.1.100]
4337696  gcs; glutamate--cysteine ligase A, chloroplastic [KO:K01919] [EC:6.3.2.2]
4337733  SAM1; S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
4337816  [KO:K17398] [EC:2.1.1.37]
4337818  [KO:K05933] [EC:1.14.17.4]
4338140  [KO:K00558] [EC:2.1.1.37]
4339095  [KO:K00827] [EC:2.6.1.44 2.6.1.40]
4339425  SAT5; serine O-acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
4339583  [KO:K00826] [EC:2.6.1.42]
4339682  [KO:K00026] [EC:1.1.1.37]
4339856  [KO:K00016] [EC:1.1.1.27]
4339898  [KO:K01244] [EC:3.2.2.16]
4340140  [KO:K01738] [EC:2.5.1.47]
4340142  [KO:K01738] [EC:2.5.1.47]
4340283  [KO:K01760] [EC:4.4.1.13]
4340970  [KO:K00815] [EC:2.6.1.5]
4341195  [KO:K00797] [EC:2.5.1.16]
4341252  [KO:K14455] [EC:2.6.1.1]
4341321  [KO:K01738] [EC:2.5.1.47]
4341322  [KO:K01738] [EC:2.5.1.47]
4341713  [KO:K00058] [EC:1.1.1.95 1.1.1.399]
4342575  MET1; dNA (cytosine-5)-methyltransferase 1B isoform X2 [KO:K00558] [EC:2.1.1.37]
4342980  [KO:K00928] [EC:2.7.2.4]
4342996  OsJ_23928; spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
4343165  GSH1-2; glutamate--cysteine ligase B, chloroplastic [KO:K01919] [EC:6.3.2.2]
4343993  [KO:K00026] [EC:1.1.1.37]
4344361  NAS3; nicotianamine synthase 3 [KO:K05953] [EC:2.5.1.43]
4345328  [KO:K12524] [EC:2.7.2.4 1.1.1.3]
4345657  [KO:K00026] [EC:1.1.1.37]
4345710  [KO:K00058] [EC:1.1.1.95 1.1.1.399]
4346642  [KO:K12524] [EC:2.7.2.4 1.1.1.3]
4347103  [KO:K01611] [EC:4.1.1.50]
4347224  [KO:K05933] [EC:1.14.17.4]
4347225  ACO1; 1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
4347242  [KO:K23977]
4347954  CMT3; DNA (cytosine-5)-methyltransferase CMT3 [KO:K00558] [EC:2.1.1.37]
4348560  [KO:K27857]
4348561  [KO:K27857]
4348647  ARD'_4; acireductone dioxygenase 4 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
4348656  [KO:K00547] [EC:2.1.1.10]
4348905  PP37; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
4349123  [KO:K01761] [EC:4.4.1.11]
4349970  [KO:K05933] [EC:1.14.17.4]
4350083  IDI2; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
4350455  [KO:K01251] [EC:3.13.2.1]
4350524  OsJ_33906; probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
4350712  [KO:K00815] [EC:2.6.1.5]
4351008  [KO:K21456] [EC:6.3.2.3]
4351017  [KO:K00815] [EC:2.6.1.5]
4352747  [KO:K00547] [EC:2.1.1.10]
4352752  [KO:K01011] [EC:2.8.1.1 2.8.1.2]
4352832  OsJ_36926; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [KO:K00549] [EC:2.1.1.14]
4352833  OsJ_36927; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 [KO:K00549] [EC:2.1.1.14]
4352839  CSase; cysteine synthase [KO:K01738] [EC:2.5.1.47]
4352871  OsJ_36976; malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
9266140  [KO:K01738] [EC:2.5.1.47]
9270375  [KO:K05396] [EC:4.4.1.15]
9270715  [KO:K00831] [EC:2.6.1.52]
9272324  [KO:K21456] [EC:6.3.2.3]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
osa00010  Glycolysis / Gluconeogenesis
osa00250  Alanine, aspartate and glutamate metabolism
osa00260  Glycine, serine and threonine metabolism
osa00290  Valine, leucine and isoleucine biosynthesis
osa00430  Taurine and hypotaurine metabolism
osa00480  Glutathione metabolism
osa00620  Pyruvate metabolism
osa00640  Propanoate metabolism
osa00770  Pantothenate and CoA biosynthesis
osa00900  Terpenoid backbone biosynthesis
osa00920  Sulfur metabolism
KO pathway
ko00270   

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