KEGG   PATHWAY: plep04120
Entry
plep04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Plectropomus leopardus (leopard coralgrouper)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
plep04120  Ubiquitin mediated proteolysis
plep04120

Other DBs
GO: 0016567
Organism
Plectropomus leopardus (leopard coralgrouper) [GN:plep]
Gene
121940193  polyubiquitin-B [KO:K04551]
121940694  polyubiquitin-B-like [KO:K04551]
121959681  ubc; polyubiquitin-C [KO:K04551]
121938664  polyubiquitin-B-like [KO:K04551]
121962389  ubiquitin-60S ribosomal protein L40 [KO:K02927]
121951468  ubiquitin-like [KO:K02927]
121940452  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
121954444  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
121947358  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
121958352  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
121950415  uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
121946477  NEDD8-activating enzyme E1 catalytic subunit-like [KO:K10686] [EC:6.2.1.64]
121949671  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
121942076  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
121947928  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
121949405  ube2al; ubiquitin conjugating enzyme E2 A, like [KO:K10573] [EC:2.3.2.23]
121952249  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
121958510  ubiquitin-conjugating enzyme E2 D4-like [KO:K06689] [EC:2.3.2.23]
121953216  ubiquitin-conjugating enzyme E2 D2-like [KO:K06689] [EC:2.3.2.23]
121947809  ubiquitin-conjugating enzyme E2 2-like [KO:K06689] [EC:2.3.2.23]
121947849  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
121954558  ubiquitin-conjugating enzyme E2-17 kDa-like [KO:K06689] [EC:2.3.2.23]
121944176  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
121957836  ubiquitin-conjugating enzyme E2 E2-like [KO:K20217] [EC:2.3.2.23]
121945817  ubiquitin-conjugating enzyme E2 E1-like [KO:K20217] [EC:2.3.2.23]
121945883  ube2e2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
121957570  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
121949030  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
121952413  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
121959658  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
121944412  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
121948670  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
121961246  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
121950399  ubiquitin-conjugating enzyme E2 H-like isoform X1 [KO:K10576] [EC:2.3.2.23]
121958802  SUMO-conjugating enzyme UBC9-B [KO:K10577]
121957047  SUMO-conjugating enzyme UBC9-like [KO:K10577]
121955680  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
121953920  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
121941925  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
121948170  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
121959421  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
121945060  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
121956821  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
121949972  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
121961266  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
121941849  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O isoform X1 [KO:K10581] [EC:2.3.2.24]
121957795  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
121949989  ubiquitin-conjugating enzyme E2 Q2-like isoform X1 [KO:K10582] [EC:2.3.2.23]
121964478  ube2q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
121954461  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
121937981  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
121951766  ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
121945642  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
121960699  ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
121956371  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
121954331  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
121962628  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
121944564  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
121960589  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
121941845  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
121956093  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
121956324  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SMURF2-like [KO:K04678] [EC:2.3.2.26]
121947014  itchb; itchy E3 ubiquitin protein ligase b [KO:K05632] [EC:2.3.2.26]
121956818  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
121960869  NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
121949836  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
121942780  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
121949045  nedd4a; E3 ubiquitin-protein ligase NEDD4a isoform X1 [KO:K10591] [EC:2.3.2.26]
121960188  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
121946706  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
121946361  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
121959444  probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
121940978  herc2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
121949912  probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
121949911  probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
121941901  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
121954299  LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
121943110  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
121946725  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
121958828  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
121956386  E3 ubiquitin-protein ligase CHIP-like [KO:K09561] [EC:2.3.2.27]
121944713  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
121947968  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
121944195  ubox5; RING finger protein 37 [KO:K10600]
121961511  mdm2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
121952169  E3 ubiquitin-protein ligase CBL-like [KO:K04707] [EC:2.3.2.27]
121942900  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
121952400  cblb; E3 ubiquitin-protein ligase CBL-B-B [KO:K22517] [EC:2.3.2.27]
121945464  cblc; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
121950483  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
121946204  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
121951848  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
121944892  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
121952415  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
121947947  E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
121946858  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
121946893  E3 SUMO-protein ligase PIAS1-like isoform X1 [KO:K04706] [EC:2.3.2.-]
121950441  pias1b; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
121945059  pias2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
121938831  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
121948229  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
121946360  E3 ubiquitin-protein ligase NHLRC1-like [KO:K10602] [EC:2.3.2.27]
121950984  aire; autoimmune regulator [KO:K10603]
121956862  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
121959191  breast cancer type 1 susceptibility protein homolog isoform X1 [KO:K10605] [EC:2.3.2.27]
121954743  fancl; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
121963002  E3 ubiquitin-protein ligase Midline-1-like [KO:K08285] [EC:2.3.2.27]
121949131  mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
121959629  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
121952455  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
121966503  RING-box protein 1-like [KO:K03868] [EC:2.3.2.32]
121956973  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
121960512  cullin-1 [KO:K03347]
121952874  skp1; S-phase kinase-associated protein 1 [KO:K03094]
121947873  fbxw11a; F-box and WD repeat domain-containing 11-A [KO:K03362]
121959762  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
121941957  fbxw7; F-box/WD repeat-containing protein 7 [KO:K10260]
121962093  F-box/WD repeat-containing protein 7-like [KO:K10260]
121956949  fbxo2; F-box only protein 2 [KO:K10099]
121944539  fbxo4; F-box only protein 4 isoform X1 [KO:K10291]
121960914  cul2; cullin-2 [KO:K03870]
121963933  cullin-2-like [KO:K03870]
121960631  elongin-C [KO:K03872]
121958584  elongin-B-like [KO:K03873]
121956745  elob; elongin-B [KO:K03873]
121961549  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
121943313  cul3b; cullin-3b [KO:K03869]
121951376  cullin-3-like [KO:K03869]
121942034  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
121953530  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
121952819  klhl13; kelch-like protein 13 [KO:K10447]
121949227  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
121942880  rho-related BTB domain-containing protein 2-like [KO:K07868]
121943130  rho-related BTB domain-containing protein 2-like isoform X1 [KO:K07868]
121943131  rho-related BTB domain-containing protein 2-like isoform X1 [KO:K07868]
121944813  rho-related BTB domain-containing protein 2-like isoform X1 [KO:K07868]
121947417  cul4a; cullin-4A [KO:K10609]
121948046  cul4b; cullin-4B [KO:K10609]
121946085  ddb1; LOW QUALITY PROTEIN: DNA damage-binding protein 1 [KO:K10610]
121950322  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
121944366  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
121950244  det1; DET1 homolog [KO:K10571]
121943524  rnf7; RING-box protein 2 [KO:K10611]
121952810  cullin-5 isoform X1 [KO:K10612]
121943499  cullin-5-like [KO:K10612]
121941710  suppressor of cytokine signaling 1-like [KO:K04694]
121956702  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
121958410  suppressor of cytokine signaling 3-like [KO:K04696]
121957131  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
121944709  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
121942510  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
121956758  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
121944700  cell division cycle protein 20 homolog B-like [KO:K03363]
121951570  cdc20; cell division cycle protein 20 homolog isoform X1 [KO:K03363]
121965844  fizzy-related protein homolog [KO:K03364]
121941363  fizzy-related protein homolog isoform X1 [KO:K03364]
121951840  fizzy-related protein homolog [KO:K03364]
121954603  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
121964909  cdc27; cell division cycle protein 27 homolog [KO:K03350]
121940774  anapc4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
121944375  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
121948978  cdc16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
121944310  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
121952554  cdc23; cell division cycle protein 23 homolog [KO:K03355]
121959943  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
121950309  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
121943334  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
121959275  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
plep03050  Proteasome
KO pathway
ko04120   
LinkDB

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