KEGG   PATHWAY: pmei04120
Entry
pmei04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Poecilia mexicana (shortfin molly)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pmei04120  Ubiquitin mediated proteolysis
pmei04120

Other DBs
GO: 0016567
Organism
Poecilia mexicana (shortfin molly) [GN:pmei]
Gene
106903371  smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
106903451  [KO:K10686] [EC:6.2.1.64]
106903812  cdc20; cell division cycle protein 20 homolog [KO:K03363]
106904103  ube2c; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
106904204  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
106904268  ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
106904329  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
106904889  [KO:K20217] [EC:2.3.2.23]
106904891  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
106905144  [KO:K04725] [EC:2.3.2.27]
106905294  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
106905743  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
106906423  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
106906456  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
106906713  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
106906894  [KO:K10577]
106907043  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
106907052  [KO:K10686] [EC:6.2.1.64]
106907132  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
106907571  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
106907616  brca1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
106907618  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
106907649  ube2i; SUMO-conjugating enzyme UBC9 isoform X1 [KO:K10577]
106907887  siah1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
106908599  [KO:K20217] [EC:2.3.2.23]
106908600  [KO:K20217] [EC:2.3.2.23]
106908607  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
106908739  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
106909345  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
106909354  park2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
106909481  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
106909719  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
106910240  [KO:K07868]
106910516  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
106910548  [KO:K04552] [EC:2.3.2.23]
106911732  ddb1; DNA damage-binding protein 1 [KO:K10610]
106912726  [KO:K04694]
106913992  nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
106914054  ube2d1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
106914222  ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
106914573  wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
106914672  keap1; kelch-like ECH-associated protein 1 [KO:K10456]
106914748  [KO:K10587] [EC:2.3.2.26]
106915225  socs1; suppressor of cytokine signaling 1 [KO:K04694]
106915272  fbxo4; F-box only protein 4 [KO:K10291]
106915293  cul4b; cullin-4B [KO:K10609]
106915309  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
106915552  [KO:K04707] [EC:2.3.2.27]
106915815  pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
106915872  [KO:K06689] [EC:2.3.2.23]
106916052  ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
106916077  [KO:K10612]
106916098  ube2f; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
106916101  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
106916335  [KO:K03178] [EC:6.2.1.45]
106916665  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
106916699  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
106916702  skp1; S-phase kinase-associated protein 1 [KO:K03094]
106916963  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
106917007  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
106917028  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
106917408  trim32; E3 ubiquitin-protein ligase TRIM32 isoform X1 [KO:K10607] [EC:2.3.2.27]
106917522  [KO:K10447]
106917666  [KO:K22518] [EC:2.3.2.27]
106918001  [KO:K10594] [EC:2.3.2.26]
106918397  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
106918641  [KO:K02207] [EC:2.3.2.23]
106918654  nedd4l; E3 ubiquitin-protein ligase NEDD4-like [KO:K13305] [EC:2.3.2.26]
106918709  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
106918898  cdc16; cell division cycle protein 16 homolog [KO:K03353]
106918969  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
106919162  [KO:K06689] [EC:2.3.2.23]
106919377  [KO:K10580] [EC:2.3.2.23]
106919526  ppil2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
106920078  socs3; suppressor of cytokine signaling 3 [KO:K04696]
106920240  ubox5; RING finger protein 37 [KO:K10600] [EC:2.3.2.27]
106920305  [KO:K04649] [EC:2.3.2.23]
106920317  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
106921217  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
106921253  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
106921448  [KO:K06689] [EC:2.3.2.23]
106921806  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
106921844  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
106922324  cul5; cullin-5 isoform X1 [KO:K10612]
106922367  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
106922484  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
106922508  nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
106922714  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
106922738  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
106922832  [KO:K03364]
106922890  ube2d3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
106923021  [KO:K10582] [EC:2.3.2.23]
106923031  fzr1; fizzy-related protein homolog [KO:K03364]
106923330  itch; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
106923474  cdc23; cell division cycle protein 23 homolog [KO:K03355]
106923661  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
106923695  det1; DET1 homolog isoform X1 [KO:K10571]
106924572  [KO:K16061]
106924789  [KO:K04706] [EC:2.3.2.-]
106924822  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
106925043  [KO:K10099]
106925392  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
106925859  [KO:K07868]
106925969  [KO:K03873]
106926350  [KO:K10576] [EC:2.3.2.23]
106926684  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
106927045  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
106927315  cul4a; cullin-4A [KO:K10609]
106927467  [KO:K04696]
106927544  [KO:K10573] [EC:2.3.2.23]
106927761  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
106927837  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
106927841  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
106927999  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
106928063  [KO:K10595] [EC:2.3.2.26]
106928122  fbxw11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
106928649  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
106928812  anapc10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
106928813  [KO:K10260]
106928918  syvn1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
106929440  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
106929611  [KO:K03873]
106929737  [KO:K10456]
106929795  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
106929866  [KO:K09561] [EC:2.3.2.27]
106929876  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
106930486  [KO:K02207] [EC:2.3.2.23]
106930562  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
106930895  cul2; cullin-2 [KO:K03870]
106931261  [KO:K10614] [EC:2.3.2.26]
106931268  [KO:K10614] [EC:2.3.2.26]
106931270  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
106931324  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
106931379  [KO:K03869]
106931437  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
106931442  [KO:K10575] [EC:2.3.2.23]
106931448  [KO:K03869]
106931537  rnf7; RING-box protein 2 [KO:K10611]
106931685  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
106931831  [KO:K04706] [EC:2.3.2.-]
106931888  tceb1; transcription elongation factor B polypeptide 1 [KO:K03872]
106931890  ube2w; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
106931997  [KO:K03871]
106932277  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
106932647  [KO:K10582] [EC:2.3.2.23]
106932851  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
106932861  rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
106932872  cul1; cullin-1 [KO:K03347]
106932989  rfwd2; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
106933161  aire; autoimmune regulator isoform X1 [KO:K10603]
106933418  trim37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
106933682  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
106933754  [KO:K05630] [EC:2.3.2.26]
106933845  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
106934032  mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
106934056  [KO:K04678] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pmei03050  Proteasome
KO pathway
ko04120   

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