KEGG   PATHWAY: pov04120
Entry
pov04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Paralichthys olivaceus (Japanese flounder)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pov04120  Ubiquitin mediated proteolysis
pov04120

Other DBs
GO: 0016567
Organism
Paralichthys olivaceus (Japanese flounder) [GN:pov]
Gene
109636628  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
109641991  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
109638463  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
109635180  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
109640118  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
109640736  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
109628897  NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
109634985  NEDD8-activating enzyme E1 catalytic subunit-like isoform X1 [KO:K10686] [EC:6.2.1.64]
109637825  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
109631180  ubiquitin-conjugating enzyme E2 A-like [KO:K10573] [EC:2.3.2.23]
109626234  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
109628690  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
109646866  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
109636388  ubiquitin-conjugating enzyme E2 D2-like isoform X1 [KO:K06689] [EC:2.3.2.23]
109641735  ubiquitin-conjugating enzyme E2 D2-like isoform X1 [KO:K06689] [EC:2.3.2.23]
109626678  ubiquitin-conjugating enzyme E2 D4-like [KO:K06689] [EC:2.3.2.23]
109633811  ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
109627426  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
109635107  ubiquitin-conjugating enzyme E2 D4-like isoform X1 [KO:K06689] [EC:2.3.2.23]
109631847  ubiquitin-conjugating enzyme E2 E1-like [KO:K20217] [EC:2.3.2.23]
109631885  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
109639769  ubiquitin-conjugating enzyme E2 E2-like [KO:K20217] [EC:2.3.2.23]
109639796  ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
109631209  NEDD8-conjugating enzyme UBE2F-like [KO:K10687] [EC:2.3.2.34]
109633729  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
109628758  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
109626341  ubiquitin-conjugating enzyme E2 G1-like [KO:K10575] [EC:2.3.2.23]
109632698  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
109624581  ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
109627109  ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
109642002  SUMO-conjugating enzyme UBC9-like [KO:K10577]
109629285  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
109627862  ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
109637846  ubiquitin-conjugating enzyme E2 K-like [KO:K04649] [EC:2.3.2.23]
109626478  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
109640156  ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
109645556  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
109632833  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
109624507  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
109627393  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
109624488  ubiquitin-conjugating enzyme E2 Q2-like isoform X1 [KO:K10582] [EC:2.3.2.23]
109631878  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
109625051  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
109642848  ubiquitin-conjugating enzyme E2 R1-like isoform X1 [KO:K02207] [EC:2.3.2.23]
109625587  ubiquitin-conjugating enzyme E2 R2-like [KO:K02207] [EC:2.3.2.23]
109629181  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
109633326  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
109629453  ube2w; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
109639947  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
109632450  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
109639031  ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
109625880  ubiquitin-protein ligase E3A-like [KO:K10587] [EC:2.3.2.26]
109638122  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
109629790  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
109627350  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
109641545  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
109644866  E3 ubiquitin-protein ligase SMURF2-like [KO:K04678] [EC:2.3.2.26]
109635557  E3 ubiquitin-protein ligase Itchy-like [KO:K05632] [EC:2.3.2.26]
109630871  E3 ubiquitin-protein ligase Itchy-like [KO:K05632] [EC:2.3.2.26]
109629755  wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
109634512  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
109636877  nedd4; E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
109626314  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
109630633  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
109632050  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
109626366  probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
109625372  herc2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
109641040  probable E3 ubiquitin-protein ligase HERC4 [KO:K10614] [EC:2.3.2.26]
109638241  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
109634603  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
109630367  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
109630818  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
109626710  STIP1 homology and U box-containing protein 1-like [KO:K09561] [EC:2.3.2.27]
109646056  E3 ubiquitin-protein ligase CHIP-like [KO:K09561] [EC:2.3.2.27]
109641271  ppil2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
109628540  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
109636939  ubox5; RING finger protein 37 [KO:K10600]
109643735  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
109635803  E3 ubiquitin-protein ligase CBL-like [KO:K04707] [EC:2.3.2.27]
109630213  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
109628744  cblb; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
109632976  E3 ubiquitin-protein ligase CBL-like isoform X1 [KO:K22518] [EC:2.3.2.27]
109644595  park2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
109640530  E3 ubiquitin-protein ligase Siah1 [KO:K04506] [EC:2.3.2.27]
109637261  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
109646596  rfwd2; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
109633589  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
109628681  baculoviral IAP repeat-containing protein 2-like isoform X1 [KO:K16060]
109647059  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
109635115  baculoviral IAP repeat-containing protein 7-like [KO:K16061]
109637305  E3 SUMO-protein ligase PIAS1-like isoform X1 [KO:K04706] [EC:2.3.2.-]
109624628  pias1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
109640164  pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
109625738  pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
109625385  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
109633187  nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
109640108  aire; autoimmune regulator isoform X1 [KO:K10603]
109634266  mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
109626726  brca1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
109635831  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
109631190  E3 ubiquitin-protein ligase Midline-1-like [KO:K08285] [EC:2.3.2.27]
109638900  E3 ubiquitin-protein ligase Midline-1-like [KO:K08285] [EC:2.3.2.27]
109626305  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
109628729  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
109643626  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
109645364  cul1; cullin-1 [KO:K03347]
109635809  skp1; S-phase kinase-associated protein 1 [KO:K03094]
109627371  fbxw11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
109647460  skp2; S-phase kinase-associated protein 2 [KO:K03875]
109638320  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
109628947  fbxo2; F-box only protein 2 isoform X1 [KO:K10099]
109639328  fbxo4; F-box only protein 4 [KO:K10291]
109629875  cul2; cullin-2 isoform X1 [KO:K03870]
109629574  eloc; transcription elongation factor B polypeptide 1 [KO:K03872]
109642812  transcription elongation factor B polypeptide 2 isoform X1 [KO:K03873]
109634325  transcription elongation factor B polypeptide 2-like [KO:K03873]
109628898  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
109638730  cullin-3-B-like [KO:K03869]
109634576  cullin-3 isoform X1 [KO:K03869]
109643120  cullin-3-like [KO:K03869]
109627615  keap1; kelch-like ECH-associated protein 1 [KO:K10456]
109636224  kelch-like ECH-associated protein 1 [KO:K10456]
109628495  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
109637929  kelch-like protein 9 [KO:K10447]
109633810  rho-related BTB domain-containing protein 2-like [KO:K07868]
109633603  rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
109625140  cul4a; cullin-4A [KO:K10609]
109625121  cul4b; cullin-4B [KO:K10609]
109637274  ddb1; DNA damage-binding protein 1 [KO:K10610]
109624175  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
109639319  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
109640721  det1; DET1 homolog [KO:K10571]
109634390  rnf7; RING-box protein 2 [KO:K10611]
109641160  cullin-5 isoform X1 [KO:K10612]
109635826  cullin-5-like [KO:K10612]
109638276  suppressor of cytokine signaling 1-like [KO:K04694]
109639500  socs1; suppressor of cytokine signaling 1 [KO:K04694]
109645254  suppressor of cytokine signaling 1-like [KO:K04694]
109633948  socs3; suppressor of cytokine signaling 3 [KO:K04696]
109647155  suppressor of cytokine signaling 3-like [KO:K04696]
109636991  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
109627312  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
109646800  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
109640100  cdc20; cell division cycle protein 20 homolog [KO:K03363]
109637174  cdc20b; cell division cycle protein 20 homolog B isoform X1 [KO:K03363]
109645638  fizzy-related protein homolog [KO:K03364]
109638664  fizzy-related protein homolog [KO:K03364]
109625276  fizzy-related protein homolog isoform X1 [KO:K03364]
109634767  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
109643343  cdc27; cell division cycle protein 27 homolog [KO:K03350]
109625520  anapc4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
109633883  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
109637998  cdc16; cell division cycle protein 16 homolog [KO:K03353]
109633748  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
109628623  cdc23; cell division cycle protein 23 homolog [KO:K03355]
109623637  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
109646158  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
109624685  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
109634552  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
109627105  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pov03050  Proteasome
KO pathway
ko04120   
LinkDB

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