KEGG   PATHWAY: pruf04120
Entry
pruf04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Pyrgilauda ruficollis (rufous-necked snowfinch)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pruf04120  Ubiquitin mediated proteolysis
pruf04120

Other DBs
GO: 0016567
Organism
Pyrgilauda ruficollis (rufous-necked snowfinch) [GN:pruf]
Gene
121348498  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
121348691  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
121348837  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
121349176  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
121349264  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
121349387  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
121349603  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
121349629  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
121350043  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
121350077  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
121350469  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
121350659  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
121350803  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
121350949  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
121350976  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
121351138  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
121351455  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
121351645  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
121351716  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
121351763  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
121351908  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
121351911  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
121351990  ELOC; elongin-C isoform X1 [KO:K03872]
121352135  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
121352282  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04552] [EC:2.3.2.23]
121352380  FZR1; fizzy-related protein homolog [KO:K03364]
121352382  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
121352411  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K03178] [EC:6.2.1.45]
121352474  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
121352484  MDM2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
121352617  CUL4A; cullin-4A isoform X1 [KO:K10609]
121352668  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
121352685  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
121352803  ANAPC11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
121352838  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
121352852  CUL1; cullin-1 [KO:K03347]
121352944  [KO:K20217] [EC:2.3.2.23]
121353182  [KO:K20217] [EC:2.3.2.23]
121354055  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
121354088  CDC16; cell division cycle protein 16 homolog [KO:K03353]
121354146  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
121354301  DET1; DET1 homolog isoform X1 [KO:K10571]
121354320  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
121354369  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
121354727  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
121355007  FBXW11; F-box/WD repeat-containing protein 11 [KO:K03362]
121355027  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
121355143  [KO:K10260]
121355179  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
121355186  DDB1; DNA damage-binding protein 1 [KO:K10610]
121355291  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
121355323  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
121355416  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
121355722  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
121356065  [KO:K02207] [EC:2.3.2.23]
121356133  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
121356263  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
121356599  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
121356935  [KO:K07868]
121357058  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
121357082  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
121357084  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
121357216  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
121357227  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
121357312  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
121357320  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
121357581  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
121357590  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
121357667  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
121357728  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
121357804  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
121357928  CUL3; cullin-3 [KO:K03869]
121357934  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
121357980  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
121358085  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
121358414  FBXO2; F-box only protein 2 [KO:K10099]
121358694  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
121358731  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
121358961  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
121359541  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
121359665  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
121359798  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
121360160  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
121360248  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
121360273  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
121360506  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
121360557  HUWE1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
121360992  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
121360996  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
121361199  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
121361291  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
121361304  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
121361594  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
121361901  CDC20; cell division cycle protein 20 homolog [KO:K03363]
121362520  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
121362644  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
121363028  [KO:K04725] [EC:2.3.2.27]
121363048  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
121363091  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
121363247  CUL4B; cullin-4B isoform X1 [KO:K10609]
121363370  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
121363692  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
121363799  [KO:K16063] [EC:2.3.2.-]
121363825  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
121363929  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
121363984  AIRE; autoimmune regulator [KO:K10603]
121364027  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
121364056  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
121364154  CUL5; cullin-5 [KO:K10612]
121364160  [KO:K16060]
121364358  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
121364506  CUL2; cullin-2 [KO:K03870]
121364644  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
121364689  UBOX5; RING finger protein 37 [KO:K10600]
121364723  [KO:K16063] [EC:2.3.2.-]
121364738  [KO:K10614] [EC:2.3.2.26]
121364781  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
121364810  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
121364874  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
121364918  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
121364949  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
121365101  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
121365230  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
121365488  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
121365514  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
121365540  PML; protein PML [KO:K10054] [EC:2.3.2.-]
121365647  CDC23; cell division cycle protein 23 homolog [KO:K03355]
121365670  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
121365862  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
121365954  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
121365966  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pruf03050  Proteasome
KO pathway
ko04120   

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