KEGG   PATHWAY: tmu04120
Entry
tmu04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Trichechus manatus latirostris (Florida manatee)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
tmu04120  Ubiquitin mediated proteolysis
tmu04120

Other DBs
GO: 0016567
Organism
Trichechus manatus latirostris (Florida manatee) [GN:tmu]
Gene
111822114  polyubiquitin-C [KO:K02927]
101361963  ubiquitin-60S ribosomal protein L40 [KO:K02927]
101361983  ubiquitin-40S ribosomal protein S27a [KO:K02977]
101354928  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
101340994  SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
101342223  SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
101353473  NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
101360714  ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
101354602  ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
101342851  ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
101349656  ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
101348993  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
101342443  ubiquitin-conjugating enzyme E2 C-like [KO:K06688] [EC:2.3.2.23]
101347475  ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
101343019  ubiquitin-conjugating enzyme E2 D2 isoform X2 [KO:K06689] [EC:2.3.2.23]
101359032  ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
101352009  ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
101347423  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
101359889  ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
101359493  NEDD8-conjugating enzyme UBE2F isoform X4 [KO:K10687] [EC:2.3.2.34]
101353396  ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
101342527  ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
101348625  ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
101351925  SUMO-conjugating enzyme UBC9 [KO:K10577]
101349069  ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
101354861  ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
101355290  ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
111822315  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
101359159  ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
101356158  NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
101348454  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
111819196  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
101354325  (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
101355814  ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
101355487  ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
101340622  ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
101359204  ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
101340736  ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
101345671  ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
101359004  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
101361096  ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
101346617  baculoviral IAP repeat-containing protein 6 isoform X13 [KO:K10586] [EC:2.3.2.23]
101346639  ubiquitin-protein ligase E3A isoform X2 [KO:K10587] [EC:2.3.2.26]
101360243  ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
101343580  ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
101351406  E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
101351693  E3 ubiquitin-protein ligase SMURF1 isoform X2 [KO:K04678] [EC:2.3.2.26]
101356519  E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
101348915  NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X5 [KO:K05633] [EC:2.3.2.26]
101351173  NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
101351365  E3 ubiquitin-protein ligase TRIP12 isoform X15 [KO:K10590] [EC:2.3.2.26]
101345961  E3 ubiquitin-protein ligase NEDD4 isoform X2 [KO:K10591] [EC:2.3.2.26]
101342682  E3 ubiquitin-protein ligase NEDD4-like isoform X2 [KO:K13305] [EC:2.3.2.26]
101360460  E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
101350691  E3 ubiquitin-protein ligase UBR5 isoform X2 [KO:K10593] [EC:2.3.2.26]
101357287  probable E3 ubiquitin-protein ligase HERC1 isoform X4 [KO:K10594] [EC:2.3.2.26]
101344942  E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
101361156  probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
101342534  probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
101352481  ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
101361549  ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
101349354  E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
101357998  peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
101360286  pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
101344057  RING finger protein 37 isoform X2 [KO:K10600]
101349408  E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
101342874  E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
101345632  E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
101349162  E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
101340669  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
101351306  E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
101356208  protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
101345331  TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
101361190  mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
101347829  E3 ubiquitin-protein ligase RFWD2 isoform X3 [KO:K10143] [EC:2.3.2.27]
101356142  RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
101342531  baculoviral IAP repeat-containing protein 2 [KO:K16060]
101342785  baculoviral IAP repeat-containing protein 3 isoform X1 [KO:K16060]
101346318  E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
101359332  LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 7 [KO:K16061]
101346214  E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
101355365  E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
101353500  E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
101341332  E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
101342025  E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
101353934  E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
101345568  autoimmune regulator [KO:K10603]
101347831  E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
101356605  breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
101350860  E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
101350845  E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
101354566  E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
101358313  E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
101349359  E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
101360163  cullin-1 [KO:K03347]
101350591  S-phase kinase-associated protein 1 [KO:K03094]
101345935  F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
101354147  F-box/WD repeat-containing protein 11 isoform X2 [KO:K03362]
101348198  S-phase kinase-associated protein 2 [KO:K03875]
101345376  F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
101340551  F-box only protein 2 [KO:K10099]
101353272  F-box only protein 4 [KO:K10291]
101355736  cullin-2 isoform X1 [KO:K03870]
101358566  elongin-C [KO:K03872]
101360743  elongin-B [KO:K03873]
101352062  von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
101359624  cullin-3 isoform X1 [KO:K03869]
101356221  kelch-like ECH-associated protein 1 [KO:K10456]
101349873  kelch-like protein 9 [KO:K10447]
101359729  kelch-like protein 13 [KO:K10447]
101343558  rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
101340314  rho-related BTB domain-containing protein 2 [KO:K07868]
101343799  cullin-4A isoform X1 [KO:K10609]
101343964  cullin-4B isoform X2 [KO:K10609]
101350156  DNA damage-binding protein 1 [KO:K10610]
101349998  DNA damage-binding protein 2 [KO:K10140]
101343684  DNA excision repair protein ERCC-8 [KO:K10570]
101347726  DET1 homolog isoform X1 [KO:K10571]
101343724  RING-box protein 2 isoform X1 [KO:K10611]
101361797  cullin-5 isoform X1 [KO:K10612]
101355851  suppressor of cytokine signaling 1 [KO:K04694]
101348420  suppressor of cytokine signaling 3 [KO:K04696]
101357306  cullin-7 isoform X1 [KO:K10613]
101342254  F-box/WD repeat-containing protein 8 [KO:K10264]
101349006  anaphase-promoting complex subunit 2 [KO:K03349]
101343413  cell division cycle protein 20 homolog isoform X1 [KO:K03363]
101344131  fizzy-related protein homolog isoform X7 [KO:K03364]
101355919  anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
101359880  cell division cycle protein 27 homolog isoform X1 [KO:K03350]
101360576  anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
101354846  anaphase-promoting complex subunit 5 isoform X2 [KO:K03352]
101352326  cell division cycle protein 16 homolog isoform X1 [KO:K03353]
101346834  anaphase-promoting complex subunit 7 [KO:K03354]
101359213  cell division cycle protein 23 homolog isoform X1 [KO:K03355]
101354267  anaphase-promoting complex subunit 10 isoform X2 [KO:K03357]
101360561  anaphase-promoting complex subunit CDC26 [KO:K03359]
101351952  anaphase-promoting complex subunit 13 [KO:K12456]
101350579  anaphase-promoting complex subunit 15 isoform X3 [KO:K25228]
101358950  anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
tmu03050  Proteasome
KO pathway
ko04120   
LinkDB

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