KEGG   PATHWAY: cmao04120
Entry
cmao04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Colossoma macropomum (tambaqui)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cmao04120  Ubiquitin mediated proteolysis
cmao04120

Other DBs
GO: 0016567
Organism
Colossoma macropomum (tambaqui) [GN:cmao]
Gene
118796927  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
118796932  cul1a; LOW QUALITY PROTEIN: cullin-1a [KO:K03347]
118796955  [KO:K03869]
118796975  cul3b; cullin-3b [KO:K03869]
118797039  cdc20; cell division cycle protein 20 homolog [KO:K03363]
118797085  aire; LOW QUALITY PROTEIN: autoimmune regulator [KO:K10603]
118797089  ube2w; probable ubiquitin-conjugating enzyme E2 W-A [KO:K10688] [EC:2.3.2.23 2.3.2.25]
118797121  elocb; elongin C paralog b [KO:K03872]
118797277  [KO:K03364]
118797338  pias4b; E3 SUMO-protein ligase PIAS4b isoform X1 [KO:K16065] [EC:2.3.2.27]
118797850  [KO:K10573] [EC:2.3.2.23]
118798123  cul4a; cullin-4A [KO:K10609]
118798236  [KO:K08285] [EC:2.3.2.27]
118798404  socs1b; suppressor of cytokine signaling 1b [KO:K04694]
118798570  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
118798704  cul1b; cullin-1b [KO:K03347]
118798746  ube2e2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
118798874  [KO:K10602] [EC:2.3.2.27]
118799062  eloca; elongin C paralog a [KO:K03872]
118799064  flj11011l; probable ubiquitin-conjugating enzyme E2 W-B [KO:K10688] [EC:2.3.2.23 2.3.2.25]
118799266  [KO:K10573] [EC:2.3.2.23]
118799736  cul5a; cullin-5a [KO:K10612]
118799796  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
118799840  fbxo2; F-box only protein 2 [KO:K10099]
118799907  [KO:K04554] [EC:2.3.2.23]
118799952  si:rp71-68n21.9; kelch-like protein 9 isoform X1 [KO:K10447]
118800728  cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
118800807  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
118801186  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
118801303  cdc34b; cell division cycle 34 homolog (S. cerevisiae) b [KO:K02207] [EC:2.3.2.23]
118801441  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
118802300  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
118803668  cdc27; cell division cycle protein 27 homolog [KO:K03350]
118804102  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
118804334  ube2f; LOW QUALITY PROTEIN: NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
118805218  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
118805371  [KO:K10577]
118805387  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
118805423  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
118805716  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
118805765  ube2ia; SUMO-conjugating enzyme UBC9-B [KO:K10577]
118805772  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
118806208  [KO:K20217] [EC:2.3.2.23]
118806209  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
118806540  det1; LOW QUALITY PROTEIN: DET1 homolog [KO:K10571]
118806559  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
118806671  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
118806876  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
118806894  [KO:K04725] [EC:2.3.2.27]
118807154  cul4b; cullin-4B [KO:K10609]
118807180  ube2a; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
118807317  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
118807904  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
118807936  [KO:K04678] [EC:2.3.2.26]
118807947  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
118808229  herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
118808234  ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
118808307  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
118808494  itcha; itchy E3 ubiquitin protein ligase a [KO:K05632] [EC:2.3.2.26]
118808515  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
118808564  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
118808598  anapc11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
118808659  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
118809175  ube2d1b; ubiquitin-conjugating enzyme E2 D1b [KO:K06689] [EC:2.3.2.23]
118809188  rhobtb1; rho-related BTB domain-containing protein 1 [KO:K07868]
118809299  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
118809373  socs3b; suppressor of cytokine signaling 3b [KO:K04696]
118809616  mgrn1a; probable E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
118809746  [KO:K03873]
118810098  anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
118810201  prkn; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
118810252  ube2d3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
118810495  fancl; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
118810726  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
118810872  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
118811305  mid1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
118811449  fbxw11a; F-box/WD repeat-containing protein 11a isoform X1 [KO:K03362]
118811756  ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
118812247  ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
118812327  mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
118812354  ube2e3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
118812494  vhll; von Hippel-Lindau-like protein [KO:K03871]
118813010  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
118813024  fbxo4; F-box only protein 4 [KO:K10291]
118813136  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
118813287  [KO:K07868]
118813451  ubox5; RING finger protein 37 [KO:K10600]
118813835  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
118813856  ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
118813906  fzr1a; fizzy/cell division cycle 20 related 1a [KO:K03364]
118814563  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
118814599  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
118814711  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
118814785  ubb; polyubiquitin-B [KO:K08770]
118814846  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
118815222  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
118815369  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
118815941  ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
118816206  [KO:K05633] [EC:2.3.2.26]
118816225  cul2; cullin-2 [KO:K03870]
118816503  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
118816599  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
118816639  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
118817114  fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
118817495  pias1a; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
118817529  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
118817737  pias1b; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
118817816  ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
118817867  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
118817876  ddb1; DNA damage-binding protein 1 [KO:K10610]
118817877  nedd4a; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4a [KO:K10591] [EC:2.3.2.26]
118817897  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
118818022  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
118818137  siah1; E3 ubiquitin-protein ligase Siah1 isoform X1 [KO:K04506] [EC:2.3.2.27]
118818272  rnf7; RING-box protein 2 [KO:K10611]
118818732  cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
118819055  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
118819073  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
118819136  cdc34a; cell division cycle 34 homolog (S. cerevisiae) a [KO:K02207] [EC:2.3.2.23]
118819677  [KO:K10594] [EC:2.3.2.26]
118819710  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
118819714  nedd4l; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4-like [KO:K13305] [EC:2.3.2.26]
118819785  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
118819942  [KO:K06689] [EC:2.3.2.23]
118819974  ube2g1b; ubiquitin-conjugating enzyme E2G 1b [KO:K10575] [EC:2.3.2.23]
118819980  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
118820076  cdc16; cell division cycle protein 16 homolog [KO:K03353]
118820084  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
118820199  skp1; S-phase kinase-associated protein 1 [KO:K03094]
118820373  cdc23; cell division cycle protein 23 homolog [KO:K03355]
118820703  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
118821128  smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
118821146  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
118821194  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
118821358  elob; elongin-B [KO:K03873]
118821539  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
118821639  ube2d2l; ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like [KO:K06689] [EC:2.3.2.23]
118821669  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
118822075  itchb; itchy E3 ubiquitin protein ligase b isoform X1 [KO:K05632] [EC:2.3.2.26]
118822082  uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
118822115  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
118822304  ube2j2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
118822324  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
118822616  [KO:K10686] [EC:6.2.1.64]
118822705  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
118823053  anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
118823081  birc7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
118824086  ube2d1a; ubiquitin-conjugating enzyme E2 D1a [KO:K06689] [EC:2.3.2.23]
118824204  [KO:K10586] [EC:2.3.2.23]
118824573  fbxw11b; F-box/WD repeat-containing protein 11b [KO:K03362]
118824941  ube2l3a; ubiquitin-conjugating enzyme E2 L3a [KO:K04552] [EC:2.3.2.23]
118824981  trim37; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
118825147  cblb; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
118825222  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
118825293  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
118825492  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
118825729  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
118825894  fzr1b; fizzy-related protein homolog [KO:K03364]
118825937  ube3c; LOW QUALITY PROTEIN: ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
118826937  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
118826991  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
118827034  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
118827133  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
118827159  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
118827367  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
118827736  pias2; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
cmao03050  Proteasome
KO pathway
ko04120   

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