KEGG   PATHWAY: els04120
Entry
els04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Esox lucius (northern pike)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
els04120  Ubiquitin mediated proteolysis
els04120

Other DBs
GO: 0016567
Organism
Esox lucius (northern pike) [GN:els]
Gene
105005843  [KO:K04706] [EC:2.3.2.-]
105005930  [KO:K10580] [EC:2.3.2.23]
105005995  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
105006208  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
105006395  [KO:K13305] [EC:2.3.2.26]
105006427  birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
105006500  [KO:K10260]
105006511  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
105006802  uba1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
105007127  socs1; suppressor of cytokine signaling 1 [KO:K04694]
105007267  anapc10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
105007702  [KO:K09561] [EC:2.3.2.27]
105007763  ube2a; ubiquitin-conjugating enzyme E2A [KO:K10573] [EC:2.3.2.23]
105007929  cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
105008097  ube2g2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
105008390  siah1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
105009056  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
105009164  ube2k; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
105009400  [KO:K04694]
105009648  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
105009663  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
105010333  anapc1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
105010516  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
105010549  [KO:K06689] [EC:2.3.2.23]
105010654  [KO:K10612]
105010889  cdc23; cell division cycle protein 23 homolog isoform X2 [KO:K03355]
105010898  [KO:K06689] [EC:2.3.2.23]
105011055  [KO:K10612]
105011087  [KO:K04707] [EC:2.3.2.27]
105011106  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
105011174  [KO:K10099]
105011338  [KO:K10587] [EC:2.3.2.26]
105011392  [KO:K03869]
105011558  [KO:K16065] [EC:2.3.2.27]
105011597  [KO:K02207] [EC:2.3.2.23]
105011710  [KO:K03364]
105011720  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
105011814  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
105012141  keap1; kelch-like ECH-associated protein 1 [KO:K10456]
105012405  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
105012434  cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
105012542  ube2e1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
105012543  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
105012598  rnf7; RING-box protein 2 [KO:K10611]
105012732  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
105012960  [KO:K03873]
105013055  [KO:K04696]
105013159  [KO:K04678] [EC:2.3.2.26]
105013263  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
105013286  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
105013396  [KO:K10577]
105013560  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
105013624  [KO:K04706] [EC:2.3.2.-]
105013730  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
105013948  birc7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
105014033  rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
105014117  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
105014186  [KO:K10575] [EC:2.3.2.23]
105014187  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
105014240  [KO:K06689] [EC:2.3.2.23]
105014438  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
105014503  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
105014537  ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
105014760  [KO:K04552] [EC:2.3.2.23]
105014826  [KO:K10575] [EC:2.3.2.23]
105014996  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
105015042  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
105015133  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
105015226  [KO:K08770]
105015542  [KO:K10582] [EC:2.3.2.23]
105015883  [KO:K06689] [EC:2.3.2.23]
105016347  ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
105016386  nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X3 [KO:K10591] [EC:2.3.2.26]
105016433  [KO:K10447]
105016494  [KO:K10573] [EC:2.3.2.23]
105016710  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
105016786  [KO:K02207] [EC:2.3.2.23]
105017201  vhl; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
105017801  mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X2 [KO:K06643] [EC:2.3.2.27]
105017866  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
105018371  [KO:K10582] [EC:2.3.2.23]
105018512  det1; DET1 homolog [KO:K10571]
105018520  uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
105018552  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
105018766  nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
105018783  [KO:K08285] [EC:2.3.2.27]
105019014  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
105019168  cdc20; cell division cycle protein 20 homolog [KO:K03363]
105019204  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
105019365  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
105019434  cul2; cullin-2 isoform X1 [KO:K03870]
105019654  ube2w; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
105019655  eloc; transcription elongation factor B polypeptide 1 [KO:K03872]
105019708  [KO:K10587] [EC:2.3.2.26]
105019872  [KO:K10456]
105020024  [KO:K08285] [EC:2.3.2.27]
105020052  cul4a; cullin-4A [KO:K10609]
105020346  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
105020474  [KO:K02207] [EC:2.3.2.23]
105020641  [KO:K03364]
105020919  fbxw7; F-box/WD repeat-containing protein 7 isoform X3 [KO:K10260]
105021018  herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
105021116  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X10 [KO:K10594] [EC:2.3.2.26]
105021261  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
105021299  ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
105021322  [KO:K04696]
105021607  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
105021628  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X3 [KO:K10581] [EC:2.3.2.24]
105021636  [KO:K04678] [EC:2.3.2.26]
105021721  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
105021876  [KO:K20217] [EC:2.3.2.23]
105021877  [KO:K20217] [EC:2.3.2.23]
105022022  [KO:K03364]
105022041  cul1; cullin-1 [KO:K03347]
105022147  [KO:K10580] [EC:2.3.2.23]
105022174  [KO:K10576] [EC:2.3.2.23]
105022768  [KO:K05632] [EC:2.3.2.26]
105022848  [KO:K10614] [EC:2.3.2.26]
105022889  prpf19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
105022962  ube4b; ubiquitin conjugation factor E4 B isoform X2 [KO:K10597] [EC:2.3.2.27]
105023260  birc6; baculoviral IAP repeat-containing protein 6 isoform X2 [KO:K10586] [EC:2.3.2.23]
105023335  fbxo4; F-box only protein 4 isoform X1 [KO:K10291]
105023340  ubox5; RING finger protein 37 isoform X1 [KO:K10600]
105023365  cdc27; cell division cycle protein 27 homolog [KO:K03350]
105023702  [KO:K03178] [EC:6.2.1.45]
105024054  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
105024196  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
105024245  [KO:K03347]
105024282  cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
105024403  xiap; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
105024444  [KO:K02927]
105024564  [KO:K03869]
105024684  fbxw8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
105024853  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
105025175  skp2; S-phase kinase-associated protein 2 [KO:K03875]
105025313  traf6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
105025433  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
105025461  [KO:K10099]
105025493  prkn; E3 ubiquitin-protein ligase parkin isoform X3 [KO:K04556] [EC:2.3.2.31]
105025584  cul4b; cullin-4B isoform X1 [KO:K10609]
105025789  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
105025954  ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
105025975  ddb1; DNA damage-binding protein 1 [KO:K10610]
105026169  [KO:K04649] [EC:2.3.2.23]
105026178  [KO:K03362]
105026211  [KO:K02927]
105026253  ube2f; NEDD8-conjugating enzyme UBE2F isoform X2 [KO:K10687] [EC:2.3.2.34]
105026292  ube2d1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
105026303  [KO:K07868]
105026694  skp1; S-phase kinase-associated protein 1 [KO:K03094]
105026696  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
105026747  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
105027074  [KO:K03871]
105027381  [KO:K10595] [EC:2.3.2.26]
105027846  [KO:K10447]
105028635  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
105028781  cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
105028808  aire; autoimmune regulator [KO:K10603]
105029256  [KO:K03362]
105029281  [KO:K10594] [EC:2.3.2.26]
105029658  [KO:K10577]
105029687  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
105029919  [KO:K06689] [EC:2.3.2.23]
105029954  [KO:K10599] [EC:2.3.2.27]
105030139  [KO:K03873]
105030225  [KO:K16063] [EC:2.3.2.-]
105030345  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
105030528  [KO:K10099]
105030547  [KO:K05632] [EC:2.3.2.26]
105030602  brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
105030977  ubc; polyubiquitin-C [KO:K08770]
105031178  [KO:K07868]
105031344  cdc16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
105031534  wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
106024483  [KO:K20217] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
els03050  Proteasome
KO pathway
ko04120   

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