KEGG   PATHWAY: nvs04120
Entry
nvs04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Neogale vison (American mink)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
nvs04120  Ubiquitin mediated proteolysis
nvs04120

Other DBs
GO: 0016567
Organism
Neogale vison (American mink) [GN:nvs]
Gene
122889229  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
122889324  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
122889372  UBE2K; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
122889387  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
122889415  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
122889582  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
122889616  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
122889735  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
122889768  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
122890128  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
122890941  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
122891073  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
122891259  CDC23; cell division cycle protein 23 homolog [KO:K03355]
122891671  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
122891690  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
122892274  [KO:K04552] [EC:2.3.2.23]
122892405  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
122892565  CUL2; cullin-2 [KO:K03870]
122892604  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
122892891  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
122893108  [KO:K08770]
122893204  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
122893431  DET1; DET1 homolog isoform X1 [KO:K10571]
122893602  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
122893934  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
122894156  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
122894333  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
122894394  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
122894441  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
122894627  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
122895311  ELOB; elongin-B isoform X1 [KO:K03873]
122895358  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
122895378  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
122895563  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
122895851  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
122895890  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
122896127  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
122896146  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
122896286  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
122896374  [KO:K04506] [EC:2.3.2.27]
122896381  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
122896474  [KO:K04725] [EC:2.3.2.27]
122896804  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
122897468  CUL4B; cullin-4B isoform X1 [KO:K10609]
122897476  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
122897654  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
122898726  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
122898856  [KO:K10686] [EC:6.2.1.64]
122899207  [KO:K10686] [EC:6.2.1.64]
122899214  [KO:K10686] [EC:6.2.1.64]
122899325  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
122899434  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
122899451  FBXO2; F-box only protein 2 [KO:K10099]
122899857  CDC20; cell division cycle protein 20 homolog isoform X1 [KO:K03363]
122900160  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
122900417  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
122900565  [KO:K03094]
122900613  [KO:K02927]
122900687  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
122900703  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
122900726  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
122900775  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
122901034  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
122901119  [KO:K02927]
122901954  [KO:K03094]
122902363  CUL3; cullin-3 [KO:K03869]
122902388  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
122902420  [KO:K03868] [EC:2.3.2.32]
122902456  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
122902648  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
122902732  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
122902852  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
122902902  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
122903087  UBC; LOW QUALITY PROTEIN: polyubiquitin-C [KO:K08770]
122903197  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
122903198  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
122903324  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
122903386  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
122903442  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
122903451  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
122903482  [KO:K03871]
122904378  [KO:K03094]
122904386  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
122904466  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
122904515  ELOC; elongin-C isoform X1 [KO:K03872]
122904516  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
122904682  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
122905064  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
122905176  CUL1; cullin-1 [KO:K03347]
122905239  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
122905882  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
122905934  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
122905957  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
122906071  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
122906102  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
122906161  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
122906520  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
122906608  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
122906645  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
122906794  UBB; polyubiquitin-B [KO:K08770]
122906928  [KO:K13305] [EC:2.3.2.26]
122906929  [KO:K13305] [EC:2.3.2.26]
122906930  [KO:K13305] [EC:2.3.2.26]
122907260  CUL4A; cullin-4A [KO:K10609]
122907270  CDC16; cell division cycle protein 16 homolog [KO:K03353]
122907279  [KO:K02977]
122907893  [KO:K03872]
122908253  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
122908397  CUL7; cullin-7 isoform X1 [KO:K10613]
122908475  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
122908555  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
122908680  AIRE; autoimmune regulator [KO:K10603]
122908925  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
122909020  UBE2E2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
122909026  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
122909065  [KO:K06688] [EC:2.3.2.23]
122909212  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
122909279  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
122909417  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
122909577  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
122909732  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
122909873  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
122909889  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
122909989  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
122911288  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
122911474  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
122911526  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
122911905  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
122911963  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
122912117  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
122912177  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
122912230  CUL5; LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
122912257  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
122912258  [KO:K16060]
122912330  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
122912363  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
122912635  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
122912786  [KO:K02977]
122912847  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
122912895  DDB2; DNA damage-binding protein 2 [KO:K10140]
122912970  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
122912977  DDB1; DNA damage-binding protein 1 [KO:K10610]
122913095  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
122913945  [KO:K10686] [EC:6.2.1.64]
122914482  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
122915095  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
122915173  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
122915519  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
122915997  [KO:K06688] [EC:2.3.2.23]
122916029  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
122916145  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
122916213  UBOX5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
122916487  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
122916499  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
122916724  [KO:K03094]
122916974  [KO:K03872]
122917065  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
122917314  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
122917335  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
122917373  [KO:K03872]
122917522  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
122917566  KLHL9; kelch-like protein 9 [KO:K10447]
122918237  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
122918657  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
122919070  [KO:K10580] [EC:2.3.2.23]
122919238  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
nvs03050  Proteasome
KO pathway
ko04120   

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