KEGG   PATHWAY: gacu04620
Entry
gacu04620                   Pathway                                
Name
Toll-like receptor signaling pathway - Gymnodraco acuticeps
Description
Specific families of pattern recognition receptors are responsible for detecting microbial pathogens and generating innate immune responses. Toll-like receptors (TLRs) are membrane-bound receptors identified as homologs of Toll in Drosophila. Mammalian TLRs are expressed on innate immune cells, such as macrophages and dendritic cells, and respond to the membrane components of Gram-positive or Gram-negative bacteria. Pathogen recognition by TLRs provokes rapid activation of innate immunity by inducing production of proinflammatory cytokines and upregulation of costimulatory molecules. TLR signaling pathways are separated into two groups: a MyD88-dependent pathway that leads to the production of proinflammatory cytokines with quick activation of NF-{kappa}B and MAPK, and a MyD88-independent pathway associated with the induction of IFN-beta and IFN-inducible genes, and maturation of dendritic cells with slow activation of NF-{kappa}B and MAPK.
Class
Organismal Systems; Immune system
Pathway map
gacu04620  Toll-like receptor signaling pathway
gacu04620

Organism
Gymnodraco acuticeps [GN:gacu]
Gene
117555855  tlr1; toll-like receptor 1 [KO:K05398]
117553624  LOW QUALITY PROTEIN: toll-like receptor 2 [KO:K10159]
117556193  toll-like receptor 2 [KO:K10159]
117563201  tlr18; toll-like receptor 18 [KO:K10159]
117547155  toll-like receptor 1 [KO:K10169]
117541946  bpifcl; lipopolysaccharide-binding protein [KO:K05399]
117556186  tlr3; LOW QUALITY PROTEIN: toll-like receptor 3 [KO:K05401]
117532795  toll-like receptor 5 [KO:K10168]
117554374  toll-like receptor 5 isoform X1 [KO:K10168]
117544385  tlr7; toll-like receptor 7 [KO:K05404]
117540703  tlr9; toll-like receptor 9 isoform X1 [KO:K05404]
117544386  toll-like receptor 8 [KO:K10170]
117563199  ctsk; cathepsin K [KO:K01371] [EC:3.4.22.38]
117544903  rac1a; ras-related C3 botulinum toxin substrate 1 isoform X1 [KO:K04392]
117548381  rac1b; ras-related C3 botulinum toxin substrate 1b [KO:K04392]
117545508  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922] [EC:2.7.1.153]
117534275  pik3cb; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1 [KO:K00922] [EC:2.7.1.153]
117541887  pik3cd; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922] [EC:2.7.1.153]
117542378  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like isoform X1 [KO:K00922] [EC:2.7.1.153]
117532612  pik3r2; phosphatidylinositol 3-kinase regulatory subunit beta [KO:K02649]
117545568  phosphatidylinositol 3-kinase regulatory subunit gamma-like [KO:K02649]
117535004  phosphatidylinositol 3-kinase regulatory subunit alpha-like isoform X1 [KO:K02649]
117542274  phosphatidylinositol 3-kinase regulatory subunit gamma-like isoform X1 [KO:K02649]
117560597  pik3r3b; phosphoinositide-3-kinase, regulatory subunit 3b (gamma) isoform X1 [KO:K02649]
117561441  pik3r1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649]
117544558  LOW QUALITY PROTEIN: RAC-beta serine/threonine-protein kinase-like [KO:K04456] [EC:2.7.11.1]
117551707  akt2; RAC-beta serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
117550034  akt1; LOW QUALITY PROTEIN: RAC-alpha serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
117560397  RAC-gamma serine/threonine-protein kinase-like [KO:K04456] [EC:2.7.11.1]
117560747  akt3a; LOW QUALITY PROTEIN: RAC-gamma serine/threonine-protein kinase [KO:K04456] [EC:2.7.11.1]
117545406  tollip; toll-interacting protein [KO:K05402]
117549862  myeloid differentiation primary response protein MyD88-like [KO:K04729]
117551687  tirap; toll/interleukin-1 receptor domain-containing adapter protein [KO:K05403]
117534615  fadd; FAS-associated death domain protein [KO:K02373]
117544401  casp10; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
117533360  caspase-8-like [KO:K04398] [EC:3.4.22.61]
117546044  LOW QUALITY PROTEIN: caspase-8-like [KO:K04398] [EC:3.4.22.61]
117556610  casp8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
117556611  caspase-8-like [KO:K04398] [EC:3.4.22.61]
117547837  irak4; interleukin-1 receptor-associated kinase 4 isoform X1 [KO:K04733] [EC:2.7.11.1]
117549320  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
117555242  tab1; TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X1 [KO:K04403]
117538684  tab2; TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 [KO:K04404]
117538648  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
117536277  mitogen-activated protein kinase kinase kinase 7-like [KO:K04427] [EC:2.7.11.25]
117541485  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
117536794  inhibitor of nuclear factor kappa-B kinase subunit alpha-like isoform X1 [KO:K04467] [EC:2.7.11.10]
117547053  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
117560475  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
117539703  nfkbiab; LOW QUALITY PROTEIN: nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
117554163  nfkbiaa; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a [KO:K04734]
117542722  rela; transcription factor p65 isoform X1 [KO:K04735]
117549977  map3k8; mitogen-activated protein kinase kinase kinase 8 [KO:K04415] [EC:2.7.11.25]
117538865  map2k1; dual specificity mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
117532733  map2k2b; dual specificity mitogen-activated protein kinase kinase 2b [KO:K04369] [EC:2.7.12.2]
117546153  map2k2a; dual specificity mitogen-activated protein kinase kinase 2a [KO:K04369] [EC:2.7.12.2]
117544100  mapk3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
117546425  mapk1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
117553527  map2k6; dual specificity mitogen-activated protein kinase kinase 6 [KO:K04433] [EC:2.7.12.2]
117548594  dual specificity mitogen-activated protein kinase kinase 6-like [KO:K04433] [EC:2.7.12.2]
117536890  map2k4a; dual specificity mitogen-activated protein kinase kinase 4a isoform X1 [KO:K04430] [EC:2.7.12.2]
117552371  map2k4b; dual specificity mitogen-activated protein kinase kinase 4b isoform X1 [KO:K04430] [EC:2.7.12.2]
117537936  map2k7; dual specificity mitogen-activated protein kinase kinase 7 isoform X1 [KO:K04431] [EC:2.7.12.2]
117550850  mapk12a; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
117532852  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
117532885  zgc:171775; STKc_p38 domain-containing protein [KO:K04441] [EC:2.7.11.24]
117547509  mapk14b; LOW QUALITY PROTEIN: mitogen-activated protein kinase 14B [KO:K04441] [EC:2.7.11.24]
117541966  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
117562573  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
117562577  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
117536791  mapk8a; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
117532364  mapk8b; LOW QUALITY PROTEIN: mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
117551262  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
117555963  mapk9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
117557427  june; LOW QUALITY PROTEIN: junE proto-oncogene, AP-1 transcription factor subunit [KO:K04448]
117545557  transcription factor AP-1-like [KO:K04448]
117555214  jun; transcription factor AP-1 [KO:K04448]
117533795  fosab; v-fos FBJ murine osteosarcoma viral oncogene homolog Ab [KO:K04379]
117533803  proto-oncogene c-Fos-like [KO:K04379]
117549989  fosaa; proto-oncogene c-Fos [KO:K04379]
117535957  tumor necrosis factor-like [KO:K03156]
117546446  interleukin-1 beta-like [KO:K04519]
117562823  interleukin-6-like [KO:K05405]
117538330  interleukin-12 subunit alpha-like [KO:K05406]
117554846  il12a; interleukin-12 subunit alpha [KO:K05406]
117545217  il12ba; interleukin 12Ba [KO:K05425]
117540244  il12bb; interleukin-12 subunit beta [KO:K05425]
117560348  si:dkey-88e18.2; interleukin-12 subunit beta [KO:K05425]
117555523  cxcl19; C-X-C motif chemokine 19 [KO:K10030]
117543405  interleukin-8-like [KO:K10030]
117532421  ccl35.1; chemokine (C-C motif) ligand 35, duplicate 1 [KO:K12964]
117535752  LOW QUALITY PROTEIN: C-C motif chemokine 3-like 1 [KO:K12964]
117532668  ticam1; LOW QUALITY PROTEIN: TIR domain-containing adapter molecule 1 [KO:K05842]
117558314  ripk1l; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
117535252  irf5; interferon regulatory factor 5 [KO:K09446]
117545909  irf7; interferon regulatory factor 7 [KO:K09447]
117547525  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
117556731  tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
117541281  traf3; TNF receptor-associated factor 3 [KO:K03174]
117545135  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
117547448  cd40; tumor necrosis factor receptor superfamily member 5 isoform X1 [KO:K03160]
117556350  tumor necrosis factor receptor superfamily member 5 isoform X1 [KO:K03160]
117552270  uncharacterized protein LOC117552270 [KO:K05413]
117547421  interferon a3-like [KO:K05414]
117547422  interferon a3-like [KO:K05414]
117547424  interferon a3-like [KO:K05414]
117549470  interferon alpha/beta receptor 2-like [KO:K05131]
117542661  jak1; tyrosine-protein kinase JAK1 [KO:K11217] [EC:2.7.10.2]
117548849  tyk2; LOW QUALITY PROTEIN: non-receptor tyrosine-protein kinase TYK2 [KO:K11219] [EC:2.7.10.2]
117549497  signal transducer and activator of transcription 1-alpha/beta-like isoform X1 [KO:K11220]
117549793  stat1a; signal transducer and activator of transcription 1a isoform X1 [KO:K11220]
117551086  stat2; signal transducer and activator of transcription 2 isoform X1 [KO:K11221]
117537659  irf9; LOW QUALITY PROTEIN: interferon regulatory factor 9 [KO:K04693]
117536818  C-X-C motif chemokine 11-like [KO:K05416]
Reference
  Authors
Kawai T, Akira S.
  Title
TLR signaling.
  Journal
Semin Immunol 19:24-32 (2007)
DOI:10.1016/j.smim.2006.12.004
Reference
  Authors
O'Neill LA, Bowie AG.
  Title
The family of five: TIR-domain-containing adaptors in Toll-like receptor signalling.
  Journal
Nat Rev Immunol 7:353-64 (2007)
DOI:10.1038/nri2079
Reference
  Authors
Honda K, Taniguchi T.
  Title
IRFs: master regulators of signalling by Toll-like receptors and cytosolic pattern-recognition receptors.
  Journal
Nat Rev Immunol 6:644-58 (2006)
DOI:10.1038/nri1900
Reference
  Authors
Uematsu S, Akira S.
  Title
Toll-like receptors and Type I interferons.
  Journal
J Biol Chem 282:15319-23 (2007)
DOI:10.1074/jbc.R700009200
Reference
  Authors
Akira S, Uematsu S, Takeuchi O.
  Title
Pathogen recognition and innate immunity.
  Journal
Cell 124:783-801 (2006)
DOI:10.1016/j.cell.2006.02.015
Reference
  Authors
Yamamoto M, Takeda K, Akira S.
  Title
TIR domain-containing adaptors define the specificity of TLR signaling.
  Journal
Mol Immunol 40:861-8 (2004)
DOI:10.1016/j.molimm.2003.10.006
Reference
  Authors
Means TK, Hayashi F, Smith KD, Aderem A, Luster AD.
  Title
The Toll-like receptor 5 stimulus bacterial flagellin induces maturation and chemokine production in human dendritic cells.
  Journal
J Immunol 170:5165-75 (2003)
DOI:10.4049/jimmunol.170.10.5165
Reference
  Authors
Aderem A, Smith KD.
  Title
A systems approach to dissecting immunity and inflammation.
  Journal
Semin Immunol 16:55-67 (2004)
DOI:10.1016/j.smim.2003.10.002
Reference
  Authors
Banerjee A, Gerondakis S.
  Title
Coordinating TLR-activated signaling pathways in cells of the immune system.
  Journal
Immunol Cell Biol 85:420-4 (2007)
DOI:10.1038/sj.icb.7100098
Reference
  Authors
Loniewski KJ, Patial S, Parameswaran N.
  Title
Sensitivity of TLR4- and -7-induced NF kappa B1 p105-TPL2-ERK pathway to TNF-receptor-associated-factor-6 revealed by RNAi in mouse macrophages.
  Journal
Mol Immunol 44:3715-23 (2007)
DOI:10.1016/j.molimm.2007.04.002
Reference
  Authors
Arbibe L, Mira JP, Teusch N, Kline L, Guha M, Mackman N, Godowski PJ, Ulevitch RJ, Knaus UG.
  Title
Toll-like receptor 2-mediated NF-kappa B activation requires a Rac1-dependent pathway.
  Journal
Nat Immunol 1:533-40 (2000)
DOI:10.1038/82797
Reference
  Authors
Uematsu S, Akira S.
  Title
Toll-like receptors and innate immunity.
  Journal
J Mol Med 84:712-25 (2006)
DOI:10.1007/s00109-006-0084-y
Related
pathway
gacu04010  MAPK signaling pathway
gacu04060  Cytokine-cytokine receptor interaction
gacu04120  Ubiquitin mediated proteolysis
gacu04210  Apoptosis
KO pathway
ko04620   
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