KEGG   PATHWAY: lww04622
Entry
lww04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Leptonychotes weddellii (Weddell seal)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
lww04622  RIG-I-like receptor signaling pathway
lww04622

Organism
Leptonychotes weddellii (Weddell seal) [GN:lww]
Gene
102746318  DDX58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
102744424  interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
102746754  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
102727031  MAVS; LOW QUALITY PROTEIN: mitochondrial antiviral-signaling protein [KO:K12648]
102742984  DHX58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
102743078  TANK; TRAF family member-associated NF-kappa-B activator isoform X2 [KO:K12650]
102744968  AZI2; 5-azacytidine-induced protein 2 [KO:K12651]
102738125  TANK-binding kinase 1-binding protein 1 [KO:K12652]
102742694  IKBKG; NF-kappa-B essential modulator [KO:K07210]
102749350  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
102748381  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
102732139  IRF3; interferon regulatory factor 3 isoform X1 [KO:K05411]
102737602  IRF7; interferon regulatory factor 7 isoform X3 [KO:K09447]
102748540  LOW QUALITY PROTEIN: interferon alpha-14 [KO:K05414]
102747471  interferon alpha-1/2-like [KO:K05414]
102747757  interferon alpha-1/2-like [KO:K05414]
102750324  interferon alpha-2-like [KO:K05414]
102727550  interferon alpha-1/2-like [KO:K05414]
102749740  LOW QUALITY PROTEIN: interferon alpha-2-like [KO:K05414]
102748842  IFNB1; interferon beta [KO:K05415]
102728156  LOW QUALITY PROTEIN: interferon omega-1-like [KO:K05440]
102726941  IFNE; interferon epsilon [KO:K05442]
102737391  IFNK; interferon kappa [KO:K05441]
102750365  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X1 [KO:K03171]
102737084  FADD; FAS-associated death domain protein [KO:K02373]
102727515  RIPK1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
102733039  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
102728853  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
102750184  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X2 [KO:K07209] [EC:2.7.11.10]
102732489  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
102725682  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
102732435  nuclear factor NF-kappa-B p105 subunit-like [KO:K02580]
102739707  RELA; transcription factor p65 [KO:K04735]
102736169  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
102738552  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
102741918  MAP3K7; mitogen-activated protein kinase kinase kinase 7 [KO:K04427] [EC:2.7.11.25]
102728739  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
102748780  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
102739504  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
102733548  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
102746987  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
115942902  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
102738377  mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
102725695  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
102737756  CXCL8; interleukin-8 [KO:K10030]
102743506  TNF; tumor necrosis factor [KO:K03156]
102738603  IL12A; interleukin-12 subunit alpha [KO:K05406]
102740807  IL12B; interleukin-12 subunit beta [KO:K05425]
102740919  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
102742882  ADAR; double-stranded RNA-specific adenosine deaminase isoform X2 [KO:K12968] [EC:3.5.4.37]
102749328  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
102747499  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
102732009  RNF125; E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
102728615  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
102732997  ATG5; autophagy protein 5 [KO:K08339]
102731673  ATG12; ubiquitin-like protein ATG12 isoform X1 [KO:K08336]
102739816  NLRX1; NLR family member X1 isoform X1 [KO:K12653]
102733154  STING1; stimulator of interferon genes protein isoform X1 [KO:K12654]
102737800  OTUD5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]
102745924  SIKE1; suppressor of IKBKE 1 isoform X1 [KO:K12656]
102748977  DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
102738497  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
102736233  TKFC; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
lww04010  MAPK signaling pathway
lww04120  Ubiquitin mediated proteolysis
lww04210  Apoptosis
lww04630  JAK-STAT signaling pathway
KO pathway
ko04622   
LinkDB

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