Entry
Name
Lysosome - Oncorhynchus gorbuscha (pink salmon)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Oncorhynchus gorbuscha (pink salmon) [GN:
ogo ]
Gene
123990275 si:ch73-173p19.2; V-type proton ATPase 116 kDa subunit a1 isoform X1 [KO:K02154 ]
123993316 LOW QUALITY PROTEIN: V-type proton ATPase 116 kDa subunit a3-like [KO:K02154 ]
124034267 V-type proton ATPase 116 kDa subunit a2-like isoform X1 [KO:K02154 ]
124048435 V-type proton ATPase 116 kDa subunit a1-like isoform X1 [KO:K02154 ]
123999207 V-type proton ATPase 116 kDa subunit a1-like isoform X1 [KO:K02154 ]
124013297 tcirg1a; LOW QUALITY PROTEIN: V-type proton ATPase 116 kDa subunit a3 [KO:K02154 ]
124007173 V-type proton ATPase 116 kDa subunit a2-like isoform X1 [KO:K02154 ]
124015470 V-type proton ATPase 116 kDa subunit a1-like isoform X1 [KO:K02154 ]
124032439 atp6ap1a; ATPase H+ transporting accessory protein 1a isoform X1 [KO:K03662 ]
124041861 atp6v0b; V-type proton ATPase 21 kDa proteolipid subunit [KO:K03661 ]
124001265 si:ch211-15d5.11; nuclear receptor coactivator 7 isoform X1 [KO:K25442 ]
123993538 lysosome-associated membrane glycoprotein 2-like isoform X1 [KO:K06528 ]
124010489 lamp2; lysosome-associated membrane glycoprotein 2 isoform X1 [KO:K06528 ]
124024839 LOW QUALITY PROTEIN: lysosome-associated membrane glycoprotein 1-like [KO:K06528 ]
124002618 natural resistance-associated macrophage protein 2-like isoform X1 [KO:K21398 ]
124031181 natural resistance-associated macrophage protein 2-like isoform X1 [KO:K21398 ]
123990562 laptm4a; lysosomal-associated transmembrane protein 4A [KO:K12387 ]
123994838 lysosomal-associated transmembrane protein 4A-like isoform X1 [KO:K12387 ]
123998102 lysosomal-associated transmembrane protein 4B-like isoform X1 [KO:K12387 ]
124006425 lysosomal-associated transmembrane protein 4B-like isoform X1 [KO:K12387 ]
124034069 ATP-binding cassette sub-family A member 2-like isoform X1 [KO:K05642 ]
124036568 LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 2-like [KO:K05642 ]
124036503 LOW QUALITY PROTEIN: ABC-type oligopeptide transporter ABCB9-like [KO:K05656 ]
124014459 cln5; ceroid-lipofuscinosis neuronal protein 5 isoform X1 [KO:K12390 ]
124014275 mfsd8; major facilitator superfamily domain-containing protein 8 isoform X1 [KO:K12307 ]
124048344 gnptg; N-acetylglucosamine-1-phosphotransferase subunit gamma [KO:K10087 ]
123990742 LOW QUALITY PROTEIN: cation-independent mannose-6-phosphate receptor-like [KO:K06564 ]
124036362 LOW QUALITY PROTEIN: AP-1 complex subunit beta-1-like [KO:K12392 ]
124049087 LOW QUALITY PROTEIN: AP-3 complex subunit beta-1-like [KO:K12397 ]
124003257 LOW QUALITY PROTEIN: ADP-ribosylation factor-binding protein GGA3-like [KO:K12404 ]
124003798 ADP-ribosylation factor-binding protein GGA1-like isoform X1 [KO:K12404 ]
124022058 LOW QUALITY PROTEIN: ADP-ribosylation factor-binding protein GGA3-like [KO:K12404 ]
124016134 ADP-ribosylation factor-binding protein GGA1-like isoform X1 [KO:K12404 ]
124002801 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
124019909 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
124019912 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X1 [KO:K19363 ]
124023959 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
124024241 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
124025450 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
124025619 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
123999720 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
124015082 litaf; lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
Compound
Reference
Authors
Eskelinen EL, Tanaka Y, Saftig P
Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
Journal
Reference
Authors
Neufeld EF
Title
Lysosomal storage diseases.
Journal
Reference
Authors
von Figura K, Hasilik A
Title
Lysosomal enzymes and their receptors.
Journal
Reference
Authors
Janvier K, Bonifacino JS
Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
Journal
Reference
Authors
Vergarajauregui S, Puertollano R
Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
Journal
Reference
Authors
Jaskolka MC, Winkley SR, Kane PM
Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
Journal
Reference
Authors
Majdoul S, Compton AA
Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
Journal
Related pathway
ogo04130 SNARE interactions in vesicular transport
KO pathway
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