KEGG   PATHWAY: xgl04622
Entry
xgl04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Xiphias gladius (swordfish)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
xgl04622  RIG-I-like receptor signaling pathway
xgl04622

Organism
Xiphias gladius (swordfish) [GN:xgl]
Gene
120801167  ifih1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
120807112  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
120795827  mavs; mitochondrial antiviral-signaling protein isoform X1 [KO:K12648]
120788279  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
120795368  traf3; TNF receptor-associated factor 3 [KO:K03174]
120801939  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
120784259  azi2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
120788114  TANK-binding kinase 1-binding protein 1-like [KO:K12652]
120794520  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
120803427  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
120800421  tbk1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
120783001  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
120794262  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
120792961  irf7; interferon regulatory factor 7 [KO:K09447]
120794508  interferon a3-like [KO:K05414]
120794519  interferon a3-like [KO:K05414]
120784271  interferon a3-like [KO:K05414]
120784276  LOW QUALITY PROTEIN: interferon a3-like [KO:K05414]
120799817  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
120800498  fadd; protein FADD [KO:K02373]
120799349  ripk1l; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
120799083  casp8; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
120799085  caspase-8-like [KO:K04398] [EC:3.4.22.61]
120801861  casp10; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
120794257  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
120796054  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
120805086  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
120787843  NF-kappa-B inhibitor alpha-like [KO:K04734]
120795821  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [KO:K04734]
120785165  LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit-like [KO:K02580]
120797026  rela; transcription factor p65 isoform X1 [KO:K04735]
120805168  traf2a; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
120806199  traf2b; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
120806563  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
120788739  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
120795051  mitogen-activated protein kinase kinase kinase 7-like isoform X1 [KO:K04427] [EC:2.7.11.25]
120788717  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
120785433  mapk9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
120794394  mapk8b; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
120806753  mapk10; mitogen-activated protein kinase 10 [KO:K04440] [EC:2.7.11.24]
120796205  mapk8a; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
120803801  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
120803829  zgc:171775; STKc_p38 domain-containing protein [KO:K04441] [EC:2.7.11.24]
120803885  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
120798605  mapk11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
120792797  mapk12a; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
120800214  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
120783206  mapk14b; mitogen-activated protein kinase 14B isoform X1 [KO:K04441] [EC:2.7.11.24]
120797480  growth-regulated alpha protein-like [KO:K10030]
120797524  cxcl19; C-X-C motif chemokine 19 [KO:K10030]
120799710  interleukin-8-like [KO:K10030]
120800101  interleukin-8-like [KO:K10030]
120786357  tnfa; tumor necrosis factor a (TNF superfamily, member 2) [KO:K03156]
120784265  tnfb; tumor necrosis factor b (TNF superfamily, member 2) [KO:K03156]
120792403  il12a; interleukin-12 subunit alpha [KO:K05406]
120799320  interleukin-12 subunit alpha-like [KO:K05406]
120802827  il12bb; interleukin-12 subunit beta [KO:K05425]
120785554  il12ba; interleukin 12Ba isoform X1 [KO:K05425]
120805575  si:dkey-88e18.2; interleukin-12 subunit beta isoform X1 [KO:K05425]
120784244  adar; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
120797588  zgc:92594; E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
120792537  ftr86; finTRIM family, member 86 [KO:K10652] [EC:2.3.2.27]
120800158  trim25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
120800160  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
120804389  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
120791185  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
120797155  si:cabz01101003.1; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
120793730  cylda; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
120806911  cyldb; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
120784189  atg5; autophagy protein 5 isoform X1 [KO:K08339]
120784031  atg12; ubiquitin-like protein ATG12 [KO:K08336]
120787384  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
120784894  sting1; stimulator of interferon genes protein [KO:K12654]
120803554  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
120803478  sike1; suppressor of IKBKE 1 [KO:K12656]
120798095  ATP-dependent RNA helicase DDX3X-like isoform X1 [KO:K11594] [EC:5.6.2.7]
120801057  ddx3xa; DEAD-box helicase 3 X-linked a isoform X1 [KO:K11594] [EC:5.6.2.7]
120800667  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
120797148  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
xgl04010  MAPK signaling pathway
xgl04120  Ubiquitin mediated proteolysis
xgl04210  Apoptosis
KO pathway
ko04622   
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