KEGG   PATHWAY: phi04120
Entry
phi04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Pseudopodoces humilis (Tibetan ground-tit)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
phi04120  Ubiquitin mediated proteolysis
phi04120

Other DBs
GO: 0016567
Organism
Pseudopodoces humilis (Tibetan ground-tit) [GN:phi]
Gene
102099147  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
102099431  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
102099517  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
102099878  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
102099918  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
102099986  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
102099994  DET1; DET1 homolog isoform X2 [KO:K10571]
102100041  [KO:K10595] [EC:2.3.2.26]
102100205  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
102100212  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
102100348  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
102100393  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
102100483  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
102100590  CUL1; cullin-1 isoform X2 [KO:K03347]
102100702  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
102100720  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K03178] [EC:6.2.1.45]
102100983  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
102101188  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
102101257  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
102101438  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
102101552  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
102101586  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
102101936  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
102101976  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
102102178  [KO:K07868]
102102196  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
102102204  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
102102440  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
102102573  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
102102595  [KO:K10601] [EC:2.3.2.27]
102102652  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
102102701  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
102102702  DDB1; DNA damage-binding protein 1 [KO:K10610]
102102733  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
102102758  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
102102832  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
102102869  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X9 [KO:K10594] [EC:2.3.2.26]
102103044  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
102103056  CDC20; cell division cycle protein 20 homolog [KO:K03363]
102103093  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
102103643  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
102103677  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
102103765  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
102103800  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
102104038  [KO:K25228]
102104526  RRP8; ribosomal RNA-processing protein 8 [KO:K10260]
102104599  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
102104667  UBE4B; ubiquitin conjugation factor E4 B isoform X2 [KO:K10597] [EC:2.3.2.27]
102104772  CUL3; cullin-3 [KO:K03869]
102104814  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
102104856  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
102105183  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
102105199  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
102105249  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
102105366  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X2 [KO:K10604] [EC:2.3.2.27]
102105493  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
102105574  AIRE; autoimmune regulator [KO:K10603]
102105578  ANAPC11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
102105588  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
102105698  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
102105713  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X4 [KO:K10593] [EC:2.3.2.26]
102105768  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
102105867  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
102105907  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
102106028  UBOX5; RING finger protein 37 [KO:K10600]
102106299  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
102106305  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
102106598  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X2 [KO:K06689] [EC:2.3.2.23]
102106729  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
102106755  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
102106940  UBE2O; E2/E3 hybrid ubiquitin-protein ligase UBE2O [KO:K10581] [EC:2.3.2.24]
102106954  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
102107051  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X4 [KO:K04678] [EC:2.3.2.26]
102107196  [KO:K10614] [EC:2.3.2.26]
102107383  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
102107461  TCEB2; transcription elongation factor B polypeptide 2 [KO:K03873]
102107483  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
102107587  [KO:K20217] [EC:2.3.2.23]
102107615  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
102107672  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
102107683  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
102107763  [KO:K20217] [EC:2.3.2.23]
102107793  FBXO4; F-box only protein 4 [KO:K10291]
102107893  PML; protein PML [KO:K10054] [EC:2.3.2.-]
102108022  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
102108185  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
102108340  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
102108351  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
102108355  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
102108583  KLHL13; kelch-like protein 13 isoform X2 [KO:K10447]
102108766  [KO:K10099]
102108972  TCEB1; transcription elongation factor B polypeptide 1 isoform X1 [KO:K03872]
102109076  SKP2; S-phase kinase-associated protein 2 isoform X3 [KO:K03875]
102109159  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
102109325  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
102110173  HUWE1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
102110239  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
102110358  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
102110475  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
102110484  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
102110589  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
102110712  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
102110941  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
102110949  CUL2; cullin-2 [KO:K03870]
102110981  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
102111254  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
102111298  FZR1; fizzy-related protein homolog [KO:K03364]
102111383  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X4 [KO:K04706] [EC:2.3.2.-]
102111542  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
102111610  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X6 [KO:K13305] [EC:2.3.2.26]
102111623  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
102111662  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
102112182  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
102112259  RFWD2; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
102112350  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X2 [KO:K10591] [EC:2.3.2.26]
102112379  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
102112424  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
102112555  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
102112709  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
102112753  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
102112844  CUL4A; cullin-4A [KO:K10609]
102113277  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
102113279  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
102113315  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
102113382  CUL4B; cullin-4B [KO:K10609]
102113446  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
102113491  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X2 [KO:K10686] [EC:6.2.1.64]
102113568  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
102113625  DDB2; LOW QUALITY PROTEIN: DNA damage-binding protein 2 [KO:K10140]
102113914  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
102114071  [KO:K04552] [EC:2.3.2.23]
102114297  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
102114493  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
102114708  CUL5; cullin-5 [KO:K10612]
106628740  [KO:K10601] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
phi03050  Proteasome
KO pathway
ko04120   

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