GFIT result for
fri
|
GFIT result for
fri
|
| [Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster] |
| fri:FraEuI1c_2645 (203 a.a.) |
-- |
RNA polymerase, sigma-24 subunit, ECF subfamily | |||||||
| DBHit(Length) | Over- lap | Ident. (%) | Score | Para- log | Cont. | KO | Orth | Current Annotation | |
|---|---|---|---|---|---|---|---|---|---|
| > amd:AMED_3760(193) | 187 | 67.4 | 757 | 21 | -> | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > amm:AMES_3715(193) | 187 | 67.4 | 757 | 22 | -> | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > amn:RAM_19145(193) | 187 | 67.4 | 757 | 21 | -> | ECF subfamily RNA polymerase sigma-24 factor | |||
| > amz:B737_3715(193) | 187 | 67.4 | 757 | 22 | -> | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > aprt:MUY14_29390(193) | 177 | 67.2 | 745 | 15 | -> | sigma-70 family RNA polymerase sigma factor | |||
| > fal:FRAAL4137(171) | 169 | 71.6 | 741 | 5 | -> | putative ECF sub-family Sigma-70 factor | |||
| > amyc:CU254_17200(193) | 177 | 67.8 | 737 | 14 | -> | RNA polymerase subunit sigma | |||
| > pfla:Pflav_031030(196) | 175 | 65.1 | 712 | 38 | -> | rpoE_13; RNA polymerase sigma24 factor | |||
| > kut:JJ691_47140(187) | 180 | 64.4 | 692 | 14 | -> | rpoE_14; ECF subfamily RNA polymerase sigma-24 factor | |||
| > ksl:OG809_22635(?) | 159 | 69.2 | 682 | 0 | -- | - | |||
| > agra:AGRA3207_007836(197) | 188 | 59.6 | 664 | 30 | -> | RNA polymerase sigma factor | |||
| > mfj:MFLOJ_25060(180) | 174 | 57.5 | 639 | 5 | -> | putative RNA polymerase sigma factor | |||
| > mlw:MJO58_05095(180) | 169 | 59.2 | 635 | 5 | -> | sigma-70 family RNA polymerase sigma factor | |||
| > msak:MSAS_45680(179) | 167 | 59.3 | 624 | 5 | -> | putative RNA polymerase sigma factor | |||
| > cai:Caci_2526(198) | 176 | 59.7 | 616 | 26 | -> | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > mnv:MNVI_26030(179) | 166 | 59.0 | 616 | 3 | -> | putative RNA polymerase sigma factor | |||
| > mrf:MJO55_27030(184) | 176 | 58.5 | 616 | 7 | -> | RNA polymerase sigma factor | |||
| > msim:MSIM_15410(187) | 171 | 57.9 | 616 | 4 | -> | putative RNA polymerase sigma factor | |||
| > maic:MAIC_48540(179) | 174 | 57.5 | 615 | 4 | -> | putative RNA polymerase sigma factor | |||
| > mrh:MycrhN_1984(183) | 180 | 56.1 | 613 | 3 | -> | RNA polymerase sigma factor, sigma-70 family | |||
| > mshg:MSG_00969(182) | 170 | 57.1 | 612 | 4 | -> | putative RNA polymerase sigma factor | |||
| > nah:F5544_08000(204) | 179 | 57.5 | 612 | 8 | -> | sigma-70 family RNA polymerase sigma factor | |||
| > mbrd:MBRA_05770(179) | 180 | 55.6 | 610 | 4 | -> | putative RNA polymerase sigma factor | |||
| > mhev:MHEL_14370(179) | 174 | 57.5 | 610 | 4 | -> | putative RNA polymerase sigma factor | |||
| > mpag:C0J29_05965(189) | 178 | 55.6 | 610 | 4 | -> | RNA polymerase subunit sigma | |||
| > mav:MAV_4415(179) | 172 | 56.4 | 608 | 4 | -> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mpae:K0O64_03790(179) | 174 | 55.7 | 607 | 3 | -> | RNA polymerase sigma factor | |||
| > mcro:MI149_04390(179) | 174 | 55.7 | 606 | 3 | -> | RNA polymerase sigma factor | |||
| > mseo:MSEO_49050(182) | 167 | 58.7 | 605 | 5 | -> | putative RNA polymerase sigma factor | |||
| > mye:AB431_03980(179) | 174 | 55.7 | 604 | 2 | -> | RNA polymerase sigma factor | |||
| > mao:MAP4_4342(179) | 167 | 57.5 | 603 | 5 | -> | putative RNA polymerase sigma factor | |||
| > mavi:RC58_21570(179) | 167 | 57.5 | 603 | 5 | -> | RNA polymerase sigma factor | |||
| > mavu:RE97_21620(179) | 167 | 57.5 | 603 | 5 | -> | RNA polymerase sigma factor | |||
| > mpa:MAP_4217(179) | 167 | 57.5 | 603 | 5 | -> | hypothetical protein | |||
| > mman:MMAN_31190(183) | 176 | 55.7 | 602 | 3 | -> | putative RNA polymerase sigma factor | |||
| > mmat:MMAGJ_46560(188) | 188 | 52.7 | 601 | 6 | -> | putative RNA polymerase sigma factor | |||
| > mdx:BTO20_26575(178) | 167 | 55.1 | 599 | 6 | -> | RNA polymerase subunit sigma | |||
| > mpsc:MPSYJ_10150(168) | 159 | 59.7 | 599 | 5 | -> | putative RNA polymerase sigma factor | |||
| > msto:MSTO_28290(183) | 172 | 56.4 | 592 | 5 | -> | putative RNA polymerase sigma factor | |||
| > mcb:Mycch_1362(194) | 178 | 56.7 | 589 | 2 | -> | RNA polymerase sigma factor, sigma-70 family | |||
| > mcoo:MCOO_42530(167) | 166 | 54.2 | 589 | 2 | -> | putative RNA polymerase sigma factor | |||
| > mpaa:MKK62_19730(179) | 171 | 54.4 | 587 | 4 | -> | RNA polymerase sigma factor | |||
| > nyu:D7D52_36470(?) | 172 | 54.7 | 585 | 0 | -- | - | |||
| > many:MANY_47430(178) | 174 | 55.2 | 584 | 5 | -> | putative RNA polymerase sigma factor | |||
| > mmag:MMAD_32210(172) | 158 | 60.1 | 584 | 5 | -> | putative RNA polymerase sigma factor | |||
| > abry:NYE86_06135(189) | 173 | 56.1 | 583 | 18 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > miz:BAB75_26190(184) | 182 | 53.3 | 579 | 3 | -> | RNA polymerase subunit sigma | |||
| > mste:MSTE_04816(184) | 182 | 53.3 | 578 | 4 | -> | putative RNA polymerase sigma factor | |||
| > mchi:AN480_22500(183) | 176 | 54.0 | 577 | 4 | -> | RNA polymerase subunit sigma | |||
| > dmat:Dmats_24000(178) | 164 | 55.5 | 575 | 33 | -> | RNA polymerase sigma factor | |||
| > mabb:MASS_1p0095(181) | 178 | 52.8 | 575 | 3 | -> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mir:OCQ_44170(183) | 176 | 54.0 | 573 | 3 | -> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mmuc:C1S78_017885(181) | 169 | 53.8 | 573 | 4 | -> | sigma-70 family RNA polymerase sigma factor | |||
| > msao:MYCSP_21660(184) | 182 | 53.8 | 573 | 5 | -> | RNA polymerase sigma factor | |||
| > mll:B1R94_04110(180) | 165 | 57.0 | 572 | 5 | -> | RNA polymerase subunit sigma | |||
| > mmm:W7S_21510(183) | 176 | 54.0 | 570 | 3 | -> | igma-70 family RNA polymerase sigma factor | |||
| > myo:OEM_43290(183) | 176 | 54.0 | 570 | 3 | -> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > dvc:Dvina_28740(167) | 162 | 55.6 | 569 | 43 | -> | RNA polymerase sigma factor | |||
| > mmor:MMOR_08160(165) | 164 | 55.5 | 565 | 3 | -> | putative RNA polymerase sigma factor | |||
| > mphu:MPHO_00980(181) | 167 | 53.9 | 565 | 5 | -> | putative RNA polymerase sigma factor | |||
| > maub:MAUB_11840(185) | 172 | 54.1 | 563 | 6 | -> | putative RNA polymerase sigma factor | |||
| > msal:DSM43276_04475(184) | 182 | 52.2 | 563 | 5 | -> | sigX; RNA polymerase sigma factor SigX | |||
| > msa:Mycsm_06152(165) | 156 | 59.6 | 562 | 5 | -> | RNA polymerase sigma factor, sigma-70 family | |||
| > mabl:MMASJCM_4707(185) | 179 | 51.4 | 557 | 1 | -> | RNA polymerase sigma factor | |||
| > mmv:MYCMA_03425(185) | 179 | 51.4 | 557 | 1 | -> | ECF subfamily RNA polymerase sigma-24 factor | |||
| > mab:MAB_4652(185) | 179 | 50.8 | 556 | 3 | -> | K03088 | rpoE | Putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > nsr:NS506_06042(190) | 172 | 53.5 | 553 | 4 | -> | hypothetical protein | |||
| > mid:MIP_06466(153) | 149 | 56.4 | 517 | 2 | -> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mia:OCU_42820(153) | 149 | 56.4 | 516 | 3 | -> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mit:OCO_43050(153) | 149 | 56.4 | 516 | 3 | -> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mkn:MKAN_19960(157) | 140 | 53.6 | 473 | 0 | -- | ECF subfamily RNA polymerase sigma-24 factor | |||
| > kbs:EPA93_28450(202) | 157 | 35.7 | 335 | 42 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > kbb:ccbrp13_67120(?) | 153 | 32.7 | 292 | 0 | -- | - | |||
| > sclf:BB341_16660(283) | 211 | 32.7 | 291 | 26 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > slk:SLUN_22755(264) | 210 | 32.9 | 291 | 26 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > schg:NRO40_17085(?) | 207 | 32.9 | 288 | 0 | -- | - | |||
| > sfb:CP974_17170(260) | 207 | 33.3 | 287 | 41 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > srn:A4G23_03168(260) | 207 | 33.3 | 287 | 46 | -- | K03088 | rpoE | sigL_2; ECF RNA polymerase sigma factor SigL; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sfic:EIZ62_13885(259) | 207 | 33.3 | 285 | 18 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > shun:DWB77_03416(262) | 208 | 33.2 | 285 | 18 | -- | K03088 | rpoE | sigX; ECF RNA polymerase sigma factor SigX; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sfug:CNQ36_19795(282) | 208 | 32.7 | 282 | 43 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > mmar:MODMU_4999(210) | 182 | 36.3 | 277 | 24 | -- | K03088 | rpoE | sigX; RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > svd:CP969_22130(276) | 208 | 32.2 | 275 | 24 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > speu:CGZ69_20195(282) | 209 | 31.6 | 274 | 24 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > scir:STRCI_004614(257) | 202 | 32.7 | 273 | 40 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sdv:BN159_3983(257) | 202 | 32.7 | 273 | 39 | -- | K03088 | rpoE | AdsA-like sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > strf:ASR50_20275(233) | 197 | 33.0 | 273 | 20 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sarg:HKX69_15000(?) | 202 | 33.2 | 272 | 0 | -- | - | |||
| > sdd:D9753_15265(259) | 202 | 32.7 | 272 | 25 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sgk:PET44_18605(?) | 206 | 32.0 | 272 | 0 | -- | - | |||
| > srk:FGW37_14890(277) | 203 | 31.5 | 272 | 25 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > strm:M444_19930(271) | 206 | 32.0 | 272 | 27 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > scha:CP983_18625(257) | 202 | 32.7 | 271 | 36 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > srim:CP984_21350(260) | 199 | 32.2 | 270 | 23 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > syan:NRK68_19110(272) | 206 | 32.5 | 270 | 44 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sgf:HEP81_03470(264) | 207 | 32.4 | 269 | 22 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sgx:H4W23_17935(263) | 205 | 32.2 | 269 | 23 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > slx:SLAV_21485(270) | 211 | 32.7 | 269 | 45 | -- | K03088 | rpoE | sigX; RNA polymerase sigma factor SigX; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > snf:JYK04_04899(270) | 206 | 32.0 | 269 | 26 | -- | K03088 | rpoE | sigX; ECF RNA polymerase sigma factor SigX; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > splu:LK06_013405(259) | 202 | 32.7 | 269 | 25 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |