GFIT result for
msim
|
GFIT result for
msim
|
| [Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster] |
| msim:MSIM_15410 (187 a.a.) |
-- |
putative RNA polymerase sigma factor | |||||||
| DBHit(Length) | Over- lap | Ident. (%) | Score | Para- log | Cont. | KO | Orth | Current Annotation | |
|---|---|---|---|---|---|---|---|---|---|
| > mfj:MFLOJ_25060(180) | 188 | 85.6 | 1006 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mlw:MJO58_05095(180) | 180 | 87.2 | 1000 | 5 | <> | sigma-70 family RNA polymerase sigma factor | |||
| > msak:MSAS_45680(179) | 185 | 84.9 | 996 | 5 | <> | putative RNA polymerase sigma factor | |||
| > mseo:MSEO_49050(182) | 176 | 86.4 | 983 | 5 | <> | putative RNA polymerase sigma factor | |||
| > mao:MAP4_4342(179) | 185 | 82.7 | 971 | 5 | <> | putative RNA polymerase sigma factor | |||
| > mavi:RC58_21570(179) | 185 | 82.7 | 971 | 5 | <> | RNA polymerase sigma factor | |||
| > mavu:RE97_21620(179) | 185 | 82.7 | 971 | 5 | <> | RNA polymerase sigma factor | |||
| > mpa:MAP_4217(179) | 185 | 82.7 | 971 | 5 | <> | hypothetical protein | |||
| > mav:MAV_4415(179) | 177 | 84.7 | 968 | 4 | <> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mchi:AN480_22500(183) | 176 | 84.1 | 962 | 4 | <> | RNA polymerase subunit sigma | |||
| > msto:MSTO_28290(183) | 178 | 85.4 | 962 | 5 | <> | putative RNA polymerase sigma factor | |||
| > mmm:W7S_21510(183) | 176 | 83.5 | 954 | 3 | <> | igma-70 family RNA polymerase sigma factor | |||
| > myo:OEM_43290(183) | 176 | 83.5 | 954 | 3 | <> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mir:OCQ_44170(183) | 176 | 83.5 | 953 | 3 | <> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mman:MMAN_31190(183) | 175 | 84.0 | 951 | 3 | <> | putative RNA polymerase sigma factor | |||
| > mshg:MSG_00969(182) | 179 | 81.6 | 946 | 4 | <> | putative RNA polymerase sigma factor | |||
| > mnv:MNVI_26030(179) | 174 | 82.8 | 929 | 3 | <- | putative RNA polymerase sigma factor | |||
| > mpag:C0J29_05965(189) | 178 | 79.8 | 924 | 4 | <- | RNA polymerase subunit sigma | |||
| > mbrd:MBRA_05770(179) | 176 | 83.0 | 921 | 4 | <- | putative RNA polymerase sigma factor | |||
| > mpaa:MKK62_19730(179) | 187 | 77.0 | 897 | 4 | <- | RNA polymerase sigma factor | |||
| > mcoo:MCOO_42530(167) | 160 | 81.2 | 843 | 2 | <- | putative RNA polymerase sigma factor | |||
| > mphu:MPHO_00980(181) | 178 | 75.3 | 826 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mmuc:C1S78_017885(181) | 178 | 75.3 | 824 | 4 | <- | sigma-70 family RNA polymerase sigma factor | |||
| > mabb:MASS_1p0095(181) | 177 | 75.7 | 818 | 3 | <- | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mia:OCU_42820(153) | 151 | 85.4 | 818 | 3 | <> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mit:OCO_43050(153) | 151 | 85.4 | 818 | 3 | <> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mmag:MMAD_32210(172) | 163 | 79.8 | 818 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mid:MIP_06466(153) | 151 | 84.8 | 814 | 2 | <> | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mmat:MMAGJ_46560(188) | 183 | 69.4 | 804 | 6 | <- | putative RNA polymerase sigma factor | |||
| > maub:MAUB_11840(185) | 182 | 73.1 | 789 | 6 | <- | putative RNA polymerase sigma factor | |||
| > mkn:MKAN_19960(157) | 147 | 82.3 | 779 | 0 | -- | ECF subfamily RNA polymerase sigma-24 factor | |||
| > mcb:Mycch_1362(194) | 179 | 70.4 | 773 | 2 | <- | RNA polymerase sigma factor, sigma-70 family | |||
| > mabl:MMASJCM_4707(185) | 182 | 68.1 | 772 | 1 | <- | RNA polymerase sigma factor | |||
| > miz:BAB75_26190(184) | 178 | 68.0 | 772 | 3 | <- | RNA polymerase subunit sigma | |||
| > mmv:MYCMA_03425(185) | 182 | 68.1 | 772 | 1 | <- | ECF subfamily RNA polymerase sigma-24 factor | |||
| > msal:DSM43276_04475(184) | 178 | 67.4 | 770 | 5 | <- | sigX; RNA polymerase sigma factor SigX | |||
| > msao:MYCSP_21660(184) | 178 | 68.0 | 767 | 5 | <- | RNA polymerase sigma factor | |||
| > mste:MSTE_04816(184) | 178 | 66.9 | 763 | 4 | <- | putative RNA polymerase sigma factor | |||
| > maic:MAIC_48540(179) | 176 | 68.8 | 762 | 4 | <- | putative RNA polymerase sigma factor | |||
| > mab:MAB_4652(185) | 182 | 67.0 | 758 | 3 | <- | K03088 | rpoE | Putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > mhev:MHEL_14370(179) | 177 | 67.2 | 758 | 4 | <- | putative RNA polymerase sigma factor | |||
| > mye:AB431_03980(179) | 177 | 67.8 | 758 | 2 | <- | RNA polymerase sigma factor | |||
| > mdx:BTO20_26575(178) | 174 | 69.0 | 753 | 6 | <- | RNA polymerase subunit sigma | |||
| > mpae:K0O64_03790(179) | 177 | 67.2 | 753 | 3 | <- | RNA polymerase sigma factor | |||
| > mcro:MI149_04390(179) | 177 | 66.7 | 749 | 3 | <- | RNA polymerase sigma factor | |||
| > mll:B1R94_04110(180) | 170 | 67.1 | 746 | 5 | <- | RNA polymerase subunit sigma | |||
| > many:MANY_47430(178) | 179 | 65.4 | 738 | 5 | <- | putative RNA polymerase sigma factor | |||
| > nah:F5544_08000(204) | 180 | 63.9 | 724 | 8 | <- | sigma-70 family RNA polymerase sigma factor | |||
| > nyu:D7D52_36470(?) | 183 | 61.2 | 685 | 0 | -- | - | |||
| > mrf:MJO55_27030(184) | 176 | 60.2 | 659 | 7 | <- | RNA polymerase sigma factor | |||
| > mrh:MycrhN_1984(183) | 179 | 55.3 | 652 | 3 | <- | RNA polymerase sigma factor, sigma-70 family | |||
| > nsr:NS506_06042(190) | 182 | 60.4 | 650 | 4 | <- | hypothetical protein | |||
| > mpsc:MPSYJ_10150(168) | 162 | 61.7 | 649 | 5 | <- | putative RNA polymerase sigma factor | |||
| > agra:AGRA3207_007836(197) | 192 | 57.8 | 645 | 30 | <- | RNA polymerase sigma factor | |||
| > kut:JJ691_47140(187) | 173 | 58.4 | 641 | 14 | <- | rpoE_14; ECF subfamily RNA polymerase sigma-24 factor | |||
| > msa:Mycsm_06152(165) | 153 | 61.4 | 635 | 5 | <- | RNA polymerase sigma factor, sigma-70 family | |||
| > mmor:MMOR_08160(165) | 156 | 59.6 | 631 | 3 | <- | putative RNA polymerase sigma factor | |||
| > amd:AMED_3760(193) | 179 | 58.7 | 629 | 21 | <- | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > amm:AMES_3715(193) | 179 | 58.7 | 629 | 22 | <- | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > amn:RAM_19145(193) | 179 | 58.7 | 629 | 21 | <- | ECF subfamily RNA polymerase sigma-24 factor | |||
| > amz:B737_3715(193) | 179 | 58.7 | 629 | 22 | <- | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > ksl:OG809_22635(?) | 162 | 62.3 | 628 | 0 | -- | - | |||
| > pfla:Pflav_031030(196) | 195 | 53.8 | 623 | 38 | <- | rpoE_13; RNA polymerase sigma24 factor | |||
| > fri:FraEuI1c_2645(203) | 171 | 57.9 | 616 | 14 | <- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > amyc:CU254_17200(193) | 173 | 59.0 | 609 | 14 | <- | RNA polymerase subunit sigma | |||
| > fal:FRAAL4137(171) | 166 | 57.8 | 591 | 5 | <- | putative ECF sub-family Sigma-70 factor | |||
| > aprt:MUY14_29390(193) | 175 | 57.1 | 587 | 15 | <- | sigma-70 family RNA polymerase sigma factor | |||
| > cai:Caci_2526(198) | 182 | 52.2 | 565 | 26 | <- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > abry:NYE86_06135(189) | 158 | 53.8 | 562 | 18 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > dmat:Dmats_24000(178) | 177 | 50.8 | 544 | 33 | <- | RNA polymerase sigma factor | |||
| > dvc:Dvina_28740(167) | 162 | 54.3 | 542 | 43 | <- | RNA polymerase sigma factor | |||
| > kbs:EPA93_28450(202) | 167 | 39.5 | 370 | 42 | <- | sigma-70 family RNA polymerase sigma factor | |||
| > thug:KNN16_11270(184) | 174 | 37.4 | 309 | 8 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > kbb:ccbrp13_67120(?) | 158 | 31.0 | 297 | 0 | -- | - | |||
| > mmar:MODMU_4999(210) | 195 | 34.4 | 284 | 24 | -- | K03088 | rpoE | sigX; RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sgrg:L0C25_07670(?) | 185 | 31.9 | 277 | 0 | -- | - | |||
| > ssyi:EKG83_44655(214) | 181 | 32.0 | 274 | 41 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > smob:J7W19_14715(270) | 188 | 33.0 | 270 | 29 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > slv:SLIV_21180(264) | 188 | 31.9 | 267 | 23 | -- | K03088 | rpoE | ECF sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > strd:NI25_16760(264) | 188 | 31.9 | 267 | 22 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > ami:Amir_6736(217) | 181 | 33.7 | 265 | 23 | -- | K03088 | rpoE | RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > samb:SAM23877_4236(264) | 188 | 31.9 | 265 | 22 | -- | K03088 | rpoE | ECF sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > spav:Spa2297_18565(264) | 188 | 31.9 | 265 | 24 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > snf:JYK04_04899(270) | 188 | 31.9 | 264 | 26 | -- | K03088 | rpoE | sigX; ECF RNA polymerase sigma factor SigX; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > ssub:CP968_14860(272) | 188 | 31.9 | 264 | 17 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > stry:EQG64_14440(258) | 183 | 32.8 | 264 | 9 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > apre:CNX65_33200(217) | 181 | 33.1 | 263 | 26 | -- | K03088 | rpoE | RNA polymerase subunit sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > snw:BBN63_13890(266) | 188 | 31.9 | 263 | 18 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sspo:DDQ41_18215(278) | 188 | 31.4 | 263 | 22 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sfic:EIZ62_13885(259) | 188 | 31.9 | 262 | 18 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > aef:GEV26_15875(232) | 189 | 34.4 | 261 | 6 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > mdr:MDOR_06240(174) | 170 | 33.5 | 261 | 2 | -- | K03088 | rpoE | RNA polymerase sigma24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > salf:SMD44_04936(257) | 188 | 31.4 | 261 | 31 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sdrz:NEH16_17870(259) | 187 | 32.6 | 261 | 19 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sfp:QUY26_16575(?) | 188 | 31.4 | 261 | 0 | -- | - | |||
| > ssia:A7J05_15960(261) | 188 | 31.4 | 261 | 21 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > stsu:B7R87_19305(289) | 183 | 32.2 | 261 | 37 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > kab:B7C62_14195(259) | 183 | 32.2 | 260 | 24 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sata:C5746_18535(258) | 183 | 32.2 | 260 | 21 | -- | K03088 | rpoE | RNA polymerase subunit sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sfiy:F0344_20560(?) | 183 | 32.2 | 260 | 0 | -- | - | |||