GFIT result for
msa
|
GFIT result for
msa
|
| [Motif] [Align] [N-J Tree] [Dendrogram] [Gene Cluster] |
| msa:Mycsm_06152 (165 a.a.) |
-- |
RNA polymerase sigma factor, sigma-70 family | |||||||
| DBHit(Length) | Over- lap | Ident. (%) | Score | Para- log | Cont. | KO | Orth | Current Annotation | |
|---|---|---|---|---|---|---|---|---|---|
| > mrh:MycrhN_1984(183) | 164 | 81.7 | 876 | 3 | <- | RNA polymerase sigma factor, sigma-70 family | |||
| > mmor:MMOR_08160(165) | 165 | 79.4 | 862 | 3 | <- | putative RNA polymerase sigma factor | |||
| > mpsc:MPSYJ_10150(168) | 165 | 73.9 | 784 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mrf:MJO55_27030(184) | 164 | 72.0 | 763 | 7 | <- | RNA polymerase sigma factor | |||
| > nah:F5544_08000(204) | 157 | 68.2 | 740 | 8 | <- | sigma-70 family RNA polymerase sigma factor | |||
| > nyu:D7D52_36470(?) | 161 | 63.4 | 691 | 0 | -- | - | |||
| > mcoo:MCOO_42530(167) | 165 | 60.0 | 682 | 2 | <- | putative RNA polymerase sigma factor | |||
| > mabb:MASS_1p0095(181) | 157 | 63.1 | 674 | 3 | -- | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mmuc:C1S78_017885(181) | 157 | 63.1 | 673 | 4 | <- | sigma-70 family RNA polymerase sigma factor | |||
| > mphu:MPHO_00980(181) | 157 | 63.1 | 673 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mye:AB431_03980(179) | 160 | 62.5 | 672 | 2 | <- | RNA polymerase sigma factor | |||
| > mpaa:MKK62_19730(179) | 160 | 61.9 | 671 | 4 | <- | RNA polymerase sigma factor | |||
| > nsr:NS506_06042(190) | 161 | 62.7 | 668 | 4 | <- | hypothetical protein | |||
| > mpag:C0J29_05965(189) | 156 | 62.8 | 666 | 4 | <- | RNA polymerase subunit sigma | |||
| > maic:MAIC_48540(179) | 160 | 62.5 | 660 | 4 | <- | putative RNA polymerase sigma factor | |||
| > mhev:MHEL_14370(179) | 160 | 62.5 | 660 | 4 | <- | putative RNA polymerase sigma factor | |||
| > many:MANY_47430(178) | 153 | 62.1 | 659 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mpae:K0O64_03790(179) | 160 | 61.9 | 657 | 3 | <- | RNA polymerase sigma factor | |||
| > mshg:MSG_00969(182) | 153 | 62.1 | 656 | 4 | <- | putative RNA polymerase sigma factor | |||
| > mcro:MI149_04390(179) | 160 | 61.3 | 654 | 3 | <- | RNA polymerase sigma factor | |||
| > mll:B1R94_04110(180) | 156 | 62.2 | 654 | 5 | <- | RNA polymerase subunit sigma | |||
| > mnv:MNVI_26030(179) | 157 | 61.1 | 654 | 3 | <- | putative RNA polymerase sigma factor | |||
| > mlw:MJO58_05095(180) | 153 | 60.1 | 652 | 5 | <- | sigma-70 family RNA polymerase sigma factor | |||
| > msto:MSTO_28290(183) | 153 | 62.1 | 651 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mfj:MFLOJ_25060(180) | 153 | 60.1 | 650 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mman:MMAN_31190(183) | 155 | 61.9 | 649 | 3 | <- | putative RNA polymerase sigma factor | |||
| > mbrd:MBRA_05770(179) | 162 | 58.6 | 648 | 4 | <- | putative RNA polymerase sigma factor | |||
| > mseo:MSEO_49050(182) | 155 | 60.6 | 648 | 5 | <- | putative RNA polymerase sigma factor | |||
| > maub:MAUB_11840(185) | 161 | 61.5 | 646 | 6 | <- | putative RNA polymerase sigma factor | |||
| > mabl:MMASJCM_4707(185) | 163 | 60.1 | 644 | 1 | <- | RNA polymerase sigma factor | |||
| > mmv:MYCMA_03425(185) | 163 | 60.1 | 644 | 1 | <- | ECF subfamily RNA polymerase sigma-24 factor | |||
| > msak:MSAS_45680(179) | 153 | 60.8 | 644 | 5 | <- | putative RNA polymerase sigma factor | |||
| > miz:BAB75_26190(184) | 164 | 61.0 | 643 | 3 | <- | RNA polymerase subunit sigma | |||
| > msao:MYCSP_21660(184) | 161 | 63.4 | 643 | 5 | <- | RNA polymerase sigma factor | |||
| > mste:MSTE_04816(184) | 163 | 60.1 | 642 | 4 | <- | putative RNA polymerase sigma factor | |||
| > msal:DSM43276_04475(184) | 160 | 60.6 | 640 | 5 | <- | sigX; RNA polymerase sigma factor SigX | |||
| > mmat:MMAGJ_46560(188) | 158 | 59.5 | 635 | 6 | <- | putative RNA polymerase sigma factor | |||
| > msim:MSIM_15410(187) | 153 | 61.4 | 635 | 4 | <- | putative RNA polymerase sigma factor | |||
| > mab:MAB_4652(185) | 163 | 58.3 | 633 | 3 | <- | K03088 | rpoE | Putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > mav:MAV_4415(179) | 156 | 59.6 | 631 | 4 | <- | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mao:MAP4_4342(179) | 156 | 59.6 | 630 | 5 | <- | putative RNA polymerase sigma factor | |||
| > mavi:RC58_21570(179) | 156 | 59.6 | 630 | 5 | <- | RNA polymerase sigma factor | |||
| > mavu:RE97_21620(179) | 156 | 59.6 | 630 | 5 | <- | RNA polymerase sigma factor | |||
| > mpa:MAP_4217(179) | 156 | 59.6 | 630 | 5 | <- | hypothetical protein | |||
| > mmag:MMAD_32210(172) | 161 | 59.0 | 624 | 5 | <- | putative RNA polymerase sigma factor | |||
| > kut:JJ691_47140(187) | 160 | 62.5 | 616 | 14 | <- | rpoE_14; ECF subfamily RNA polymerase sigma-24 factor | |||
| > mchi:AN480_22500(183) | 155 | 58.1 | 616 | 4 | <- | RNA polymerase subunit sigma | |||
| > mdx:BTO20_26575(178) | 159 | 59.1 | 615 | 6 | <- | RNA polymerase subunit sigma | |||
| > mir:OCQ_44170(183) | 155 | 58.1 | 612 | 3 | <- | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mmm:W7S_21510(183) | 153 | 58.2 | 607 | 3 | <- | igma-70 family RNA polymerase sigma factor | |||
| > myo:OEM_43290(183) | 153 | 58.2 | 607 | 3 | <- | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mcb:Mycch_1362(194) | 162 | 56.8 | 599 | 2 | <- | RNA polymerase sigma factor, sigma-70 family | |||
| > amd:AMED_3760(193) | 166 | 59.0 | 597 | 21 | <- | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > amm:AMES_3715(193) | 166 | 59.0 | 597 | 22 | <- | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > amn:RAM_19145(193) | 166 | 59.0 | 597 | 21 | <- | ECF subfamily RNA polymerase sigma-24 factor | |||
| > amz:B737_3715(193) | 166 | 59.0 | 597 | 22 | <- | rpoE; ECF subfamily RNA polymerase sigma-24 factor | |||
| > ksl:OG809_22635(?) | 159 | 58.5 | 587 | 0 | -- | - | |||
| > fal:FRAAL4137(171) | 167 | 56.3 | 582 | 5 | <- | putative ECF sub-family Sigma-70 factor | |||
| > agra:AGRA3207_007836(197) | 162 | 57.4 | 580 | 30 | <- | RNA polymerase sigma factor | |||
| > amyc:CU254_17200(193) | 162 | 58.0 | 575 | 14 | <- | RNA polymerase subunit sigma | |||
| > mia:OCU_42820(153) | 147 | 57.1 | 566 | 3 | <- | RNA polymerase sigma factor, sigma-70 family protein | |||
| > mit:OCO_43050(153) | 147 | 57.1 | 566 | 3 | <- | RNA polymerase sigma factor, sigma-70 family protein | |||
| > fri:FraEuI1c_2645(203) | 156 | 59.6 | 562 | 14 | <- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > mid:MIP_06466(153) | 147 | 56.5 | 562 | 2 | <- | RNA polymerase sigma factor, sigma-70 family protein | |||
| > aprt:MUY14_29390(193) | 166 | 57.2 | 561 | 15 | <- | sigma-70 family RNA polymerase sigma factor | |||
| > pfla:Pflav_031030(196) | 160 | 53.1 | 556 | 38 | <- | rpoE_13; RNA polymerase sigma24 factor | |||
| > abry:NYE86_06135(189) | 159 | 55.3 | 540 | 18 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > cai:Caci_2526(198) | 168 | 51.2 | 534 | 26 | <- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > mkn:MKAN_19960(157) | 131 | 57.3 | 513 | 0 | -- | ECF subfamily RNA polymerase sigma-24 factor | |||
| > dvc:Dvina_28740(167) | 161 | 52.2 | 498 | 43 | <- | RNA polymerase sigma factor | |||
| > dmat:Dmats_24000(178) | 161 | 51.6 | 493 | 33 | <- | RNA polymerase sigma factor | |||
| > kbs:EPA93_28450(202) | 155 | 40.6 | 358 | 42 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > kbb:ccbrp13_67120(?) | 163 | 34.4 | 314 | 0 | -- | - | |||
| > coh:EAV92_18100(187) | 162 | 33.3 | 269 | 7 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > pft:JBW_03215(185) | 147 | 32.7 | 248 | 2 | -- | RNA polymerase, sigma-24 subunit, RpoE, ECF subfamily | |||
| > bbev:BBEV_3264(218) | 163 | 32.5 | 246 | 8 | -- | putative RNA polymerase sigma factor | |||
| > sti:Sthe_2346(181) | 150 | 33.3 | 244 | 12 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > ddh:Desde_0999(169) | 156 | 30.1 | 243 | 4 | -- | RNA polymerase sigma factor, sigma-70 family | |||
| > aer:AERYTH_03095(216) | 172 | 32.6 | 239 | 6 | -- | RNA polymerase sigma70 factor | |||
| > cwo:Cwoe_1762(181) | 155 | 32.3 | 239 | 33 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > dhd:Dhaf_1091(169) | 155 | 29.0 | 238 | 6 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > dsy:DSY4232(169) | 155 | 29.0 | 238 | 7 | -- | hypothetical protein | |||
| > talu:JDY09_07705(207) | 167 | 32.3 | 236 | 11 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > cth:Cthe_1809(179) | 148 | 34.5 | 235 | 4 | -- | K03088 | rpoE | RNA polymerase, sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > ctx:Clo1313_2483(179) | 148 | 34.5 | 235 | 4 | -- | RNA polymerase, sigma-24 subunit, ECF subfamily | |||
| > gor:KTR9_3900(194) | 158 | 34.2 | 235 | 5 | -- | DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein | |||
| > ncd:ACONDI_03081(193) | 152 | 26.3 | 235 | 5 | -- | K03088 | rpoE | sigX_2; ECF RNA polymerase sigma factor SigX; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > mflv:NCTC10271_04125(176) | 144 | 32.6 | 234 | 7 | -- | K03088 | rpoE | sigM_2; sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > bala:DSM104299_04523(176) | 155 | 32.3 | 232 | 0 | -- | K03088 | rpoE | sigM; ECF RNA polymerase sigma factor SigM; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > gami:IHQ52_22875(181) | 157 | 35.0 | 232 | 7 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sbae:DSM104329_04315(184) | 164 | 32.9 | 232 | 17 | -- | sigM_2; ECF RNA polymerase sigma factor SigM | |||
| > thug:KNN16_11270(184) | 160 | 33.8 | 232 | 8 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > mdr:MDOR_06240(174) | 147 | 34.7 | 231 | 2 | -- | K03088 | rpoE | RNA polymerase sigma24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sgrg:L0C25_07670(?) | 154 | 33.1 | 231 | 0 | -- | - | |||
| > tis:P3962_00150(169) | 157 | 31.2 | 231 | 3 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > aef:GEV26_15875(232) | 164 | 29.9 | 230 | 6 | -- | sigma-70 family RNA polymerase sigma factor | |||
| > ssyi:EKG83_44655(214) | 164 | 34.1 | 230 | 41 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > sted:SPTER_35610(195) | 148 | 35.1 | 230 | 1 | -- | sigD_2; ECF RNA polymerase sigma factor SigD | |||
| > aacd:LWP59_05850(178) | 163 | 34.4 | 228 | 25 | -- | K03088 | rpoE | sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |
| > mthn:4412656_00899(174) | 146 | 35.6 | 228 | 3 | -- | K03088 | rpoE | sigM; sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily | |