KEGG   PATHWAY: biu04622
Entry
biu04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Bos indicus (zebu cattle)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
biu04622  RIG-I-like receptor signaling pathway
biu04622

Organism
Bos indicus (zebu cattle) [GN:biu]
Gene
109553086  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
109553353  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
109553773  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
109554054  ADAR; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
109554276  TKFC; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
109554392  RELA; transcription factor p65 [KO:K04735]
109554562  FADD; FAS-associated death domain protein [KO:K02373]
109554878  OTUD5; OTU domain-containing protein 5 [KO:K12655] [EC:3.4.19.12]
109555601  [KO:K11594] [EC:5.6.2.7]
109555888  SIKE1; suppressor of IKBKE 1 [KO:K12656]
109559273  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
109560296  NFKB1; LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit [KO:K02580]
109560570  CXCL8; interleukin-8 [KO:K10030]
109560575  [KO:K10030]
109560594  CXCL10; C-X-C motif chemokine 10 [KO:K12671]
109560650  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
109561305  IL12B; interleukin-12 subunit beta [KO:K05425]
109561331  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
109561570  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
109562082  TMEM173; stimulator of interferon genes protein [KO:K12654]
109562628  IFNE; interferon epsilon [KO:K05442]
109562635  [KO:K05440]
109562636  [KO:K05440]
109562637  [KO:K05440]
109562638  [KO:K05414]
109562640  [KO:K05440]
109562641  [KO:K05414]
109562642  [KO:K05440]
109562643  [KO:K05440]
109562644  [KO:K05414]
109562645  [KO:K05440]
109562646  [KO:K05440]
109562647  [KO:K05440]
109562651  [KO:K05440]
109562652  [KO:K05414]
109562653  [KO:K05440]
109562654  [KO:K05440]
109562655  [KO:K05440]
109562656  [KO:K05414]
109562657  [KO:K05440]
109562658  [KO:K05440]
109562659  [KO:K05414]
109562660  [KO:K05414]
109562662  [KO:K05440]
109562663  [KO:K05440]
109562664  [KO:K05440]
109562665  [KO:K05414]
109562666  [KO:K05440]
109562667  [KO:K05415]
109562668  [KO:K05414]
109562670  [KO:K05414]
109562671  [KO:K05415]
109562673  [KO:K05414]
109562674  [KO:K05415]
109562675  [KO:K05415]
109562815  DDX58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
109562827  IFNK; interferon kappa [KO:K05441]
109562844  [KO:K05440]
109562846  [KO:K05440]
109562847  [KO:K05414]
109562848  [KO:K05440]
109562852  [KO:K05415]
109562853  [KO:K05415]
109562855  [KO:K05415]
109563867  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
109563902  MAP3K7; mitogen-activated protein kinase kinase kinase 7 [KO:K04427] [EC:2.7.11.25]
109564477  IL12A; interleukin-12 subunit alpha [KO:K05406]
109564625  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
109565970  [KO:K03175] [EC:2.3.2.27]
109566626  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
109567061  IFIH1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
109567123  TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650]
109567183  MAVS; mitochondrial antiviral-signaling protein isoform X1 [KO:K12648]
109567532  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
109569521  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
109569836  NLRX1; NLR family member X1 [KO:K12653]
109570721  IKBKE; LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
109570760  ISG15; ubiquitin-like protein ISG15 [KO:K12159]
109572224  IRF3; interferon regulatory factor 3 isoform X1 [KO:K05411]
109572313  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
109572519  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X1 [KO:K03171]
109572576  NFKBIB; NF-kappa-B inhibitor beta [KO:K02581]
109573354  [KO:K10652] [EC:2.3.2.27]
109573862  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
109574039  TBKBP1; TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
109574889  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
109575564  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
109575581  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
109576250  AZI2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]
109577010  MAPK14; mitogen-activated protein kinase 14 isoform X1 [KO:K04441] [EC:2.7.11.24]
109577264  RIPK1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
109577419  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
109577428  TNF; tumor necrosis factor [KO:K03156]
109577894  RNF125; E3 ubiquitin-protein ligase RNF125 isoform X1 [KO:K12170] [EC:2.3.2.27]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
biu04010  MAPK signaling pathway
biu04120  Ubiquitin mediated proteolysis
biu04210  Apoptosis
biu04630  JAK-STAT signaling pathway
KO pathway
ko04622   

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