KEGG   PATHWAY: cclu00510
Entry
cclu00510                   Pathway                                
Name
N-Glycan biosynthesis - Coregonus clupeaformis (lake whitefish)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
cclu00510  N-Glycan biosynthesis
cclu00510

Module
cclu_M00072  N-glycosylation by oligosaccharyltransferase [PATH:cclu00510]
cclu_M00073  N-glycan precursor trimming [PATH:cclu00510]
cclu_M00075  N-glycan biosynthesis, complex type [PATH:cclu00510]
Other DBs
GO: 0006487
Organism
Coregonus clupeaformis (lake whitefish) [GN:cclu]
Gene
121531244  tmem258; transmembrane protein 258 [KO:K26502]
121531248  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
121531288  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
121531664  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
121531776  zgc:154054; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B-like isoform X1 [KO:K00738] [EC:2.4.1.145]
121532213  [KO:K01231] [EC:3.2.1.114]
121533263  [KO:K09661] [EC:2.4.1.-]
121533368  [KO:K12668]
121533440  [KO:K05546] [EC:3.2.1.207]
121533804  alg6; dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
121533988  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
121534014  [KO:K09661] [EC:2.4.1.-]
121534340  mgat4b; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B isoform X1 [KO:K00738] [EC:2.4.1.145]
121535222  [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
121535749  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
121535754  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
121536543  mgat4a; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [KO:K00738] [EC:2.4.1.145]
121536555  [KO:K00779] [EC:2.4.3.1]
121536877  [KO:K01230] [EC:3.2.1.113]
121536940  [KO:K11170] [EC:1.1.1.441]
121536956  [KO:K03844] [EC:2.4.1.131]
121537487  dpm1; dolichol-phosphate mannosyltransferase subunit 1 [KO:K00721] [EC:2.4.1.83]
121537579  mogs; mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
121537658  [KO:K00779] [EC:2.4.3.1]
121538428  [KO:K12670]
121539578  [KO:K00717] [EC:2.4.1.68]
121539807  srd5a3; polyprenol reductase isoform X2 [KO:K12345] [EC:1.3.1.22 1.3.1.94]
121539886  [KO:K12668]
121540102  [KO:K05546] [EC:3.2.1.207]
121540771  [KO:K26502]
121541102  [KO:K09658]
121541310  [KO:K07432] [EC:2.4.1.141]
121541435  [KO:K07252] [EC:3.6.1.43]
121541597  [KO:K23741]
121541640  [KO:K00738] [EC:2.4.1.145]
121541857  [KO:K05546] [EC:3.2.1.207]
121541962  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
121542050  alg5; dolichyl-phosphate beta-glucosyltransferase [KO:K00729] [EC:2.4.1.117]
121542584  [KO:K07151] [EC:2.4.99.18]
121542723  [KO:K28202]
121543195  [KO:K28202]
121543255  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
121544670  fut8a; alpha-(1,6)-fucosyltransferase [KO:K00717] [EC:2.4.1.68]
121545306  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
121545569  ddost; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
121546076  b4galt3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
121546788  [KO:K00721] [EC:2.4.1.83]
121548492  [KO:K00717] [EC:2.4.1.68]
121548644  [KO:K00736] [EC:2.4.1.143]
121548856  [KO:K00736] [EC:2.4.1.143]
121548951  [KO:K01230] [EC:3.2.1.113]
121550180  [KO:K23741]
121551149  [KO:K09661] [EC:2.4.1.-]
121551676  alg1; chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X12 [KO:K03842] [EC:2.4.1.142]
121551725  [KO:K00737] [EC:2.4.1.144]
121552274  [KO:K01230] [EC:3.2.1.113]
121552466  [KO:K00736] [EC:2.4.1.143]
121552468  [KO:K00717] [EC:2.4.1.68]
121552469  [KO:K00736] [EC:2.4.1.143]
121553463  mgat1a; alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase a [KO:K00726] [EC:2.4.1.101]
121554066  [KO:K00738] [EC:2.4.1.145]
121554151  [KO:K26501]
121554178  [KO:K03844] [EC:2.4.1.131]
121554222  [KO:K00779] [EC:2.4.3.1]
121554440  [KO:K00744] [EC:2.4.1.155]
121555067  [KO:K03850] [EC:2.4.1.256]
121555199  [KO:K03847] [EC:2.4.1.260]
121555402  [KO:K00729] [EC:2.4.1.117]
121555850  mgat3b; beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [KO:K00737] [EC:2.4.1.144]
121556116  [KO:K19478]
121556727  [KO:K07151] [EC:2.4.99.18]
121557224  [KO:K01230] [EC:3.2.1.113]
121557735  [KO:K01230] [EC:3.2.1.113]
121560260  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
121560952  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
121565887  [KO:K23741]
121568081  dhrsx; dehydrogenase/reductase SDR family member on chromosome X isoform X1 [KO:K11170] [EC:1.1.1.441]
121569723  mgat3a; beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase a [KO:K00737] [EC:2.4.1.144]
121569944  [KO:K07441] [EC:2.4.1.141]
121570339  [KO:K03842] [EC:2.4.1.142]
121571233  [KO:K26501]
121571402  dpm3; dolichol-phosphate mannosyltransferase subunit 3 [KO:K09659]
121571446  [KO:K07151] [EC:2.4.99.18]
121571678  [KO:K01230] [EC:3.2.1.113]
121571753  [KO:K03844] [EC:2.4.1.131]
121571854  [KO:K01230] [EC:3.2.1.113]
121572241  [KO:K00726] [EC:2.4.1.101]
121572841  [KO:K11170] [EC:1.1.1.441]
121573585  [KO:K07151] [EC:2.4.99.18]
121574167  [KO:K01231] [EC:3.2.1.114]
121574822  [KO:K12667]
121574969  [KO:K12666]
121575731  tusc3; tumor suppressor candidate 3 [KO:K19478]
121577036  [KO:K01231] [EC:3.2.1.114]
121577038  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
121578209  [KO:K12666]
121578292  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1 [KO:K12667]
121579090  alg9; alpha-1,2-mannosyltransferase ALG9 isoform X1 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
121579644  alg13; putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1 [KO:K07432] [EC:2.4.1.141]
121579711  dpagt1; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [KO:K01001] [EC:2.7.8.15]
121579757  alg8; probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
121579761  st6gal1; beta-galactoside alpha-2,6-sialyltransferase 1 isoform X1 [KO:K00778] [EC:2.4.3.1]
121579781  [KO:K07151] [EC:2.4.99.18]
121580921  b4galt2; beta-1,4-galactosyltransferase 2 isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
121581232  alg3; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase [KO:K03845] [EC:2.4.1.258]
121581251  [KO:K03847] [EC:2.4.1.260]
121581592  [KO:K03850] [EC:2.4.1.256]
121582076  [KO:K09658]
121582098  dolpp1; dolichyldiphosphatase 1 [KO:K07252] [EC:3.6.1.43]
121582601  [KO:K23741]
121582802  [KO:K01231] [EC:3.2.1.114]
121583202  dolk; dolichol kinase [KO:K00902] [EC:2.7.1.108]
121585141  [KO:K09661] [EC:2.4.1.-]
121586339  [KO:K07151] [EC:2.4.99.18]
121586828  mgat1b; alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b [KO:K00726] [EC:2.4.1.101]
123482087  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
123490561  [KO:K12668]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
cclu00051  Fructose and mannose metabolism
cclu00511  Other glycan degradation
cclu00513  Various types of N-glycan biosynthesis
cclu00515  Mannose type O-glycan biosynthesis
cclu00520  Amino sugar and nucleotide sugar metabolism
cclu00533  Glycosaminoglycan biosynthesis - keratan sulfate
cclu00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
cclu00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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